Click here to switch to the map view.

The map label for this gene is nodF [H]

Identifier: 13474846

GI number: 13474846

Start: 4696422

End: 4696748

Strand: Direct

Name: nodF [H]

Synonym: mlr5821

Alternate gene names: 13474846

Gene position: 4696422-4696748 (Clockwise)

Preceding gene: 13474845

Following gene: 13474847

Centisome position: 66.75

GC content: 61.16

Gene sequence:

>327_bases
ATGACCATTCCCGGCGGGGCTGCGAAGCCCCTGAGCCACGCGACCGAAAGCGGCGCAACAGGGAACCGCGTCGAATCGGA
GAGCGGCGAGAGTGTGTCCACCATCGGCGAAATAACGACTGCCACGGAACTGACCTCGCTCGGAGTCGATTCGCTGGGTC
TGGCGGATCTCCTCTGGGATGTGGAGCAGGCCTACGACATCAAGATCGACATGACGCGGCTGACGCCTGGTCGAATCTCA
AGAATGTCGGCGACATGGTGGAAGCCGTCCGCGGTTTGCTCGCGAAGGAGGTCTGATTGGACAGGCGAGTCGTCATTACT
GGGATAG

Upstream 100 bases:

>100_bases
CGGCGTGGCGTTCCCCTCACGGATCATCTGGTCCCACCTCCAGGTCATCGAACGCGATGTTGCCCGCTCGGCTCTCGCGG
ATGAAGGCGTGAAGCGGCTG

Downstream 100 bases:

>100_bases
GGGGGCTTTGCGGCTAGGCAACAACGCCGCCTCTATCTGGAAAGAGATGCGCGAAGGTCGCTCCGCCATCCGCCTGATGG
TCACTTCCGCGCTTCATGAG

Product: nodulation protein nodF

Products: NA

Alternate protein names: Host-specificity of nodulation protein A [H]

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTIPGGAAKPLSHATESGATGNRVESESGESVSTIGEITTATELTSLGVDSLGLADLLWDVEQAYDIKIDMTRLTPGRIS
RMSATWWKPSAVCSRRRSDWTGESSLLG

Sequences:

>Translated_108_residues
MTIPGGAAKPLSHATESGATGNRVESESGESVSTIGEITTATELTSLGVDSLGLADLLWDVEQAYDIKIDMTRLTPGRIS
RMSATWWKPSAVCSRRRSDWTGESSLLG
>Mature_107_residues
TIPGGAAKPLSHATESGATGNRVESESGESVSTIGEITTATELTSLGVDSLGLADLLWDVEQAYDIKIDMTRLTPGRISR
MSATWWKPSAVCSRRRSDWTGESSLLG

Specific function: Proposed to synthesize nod factor fatty acyl chain. Involved in trans-2,trans-4,trans-6,cis-11-octadecatetraenoic acid biosynthesis [H]

COG id: COG0236

COG function: function code IQ; Acyl carrier protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 acyl carrier domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009081
- InterPro:   IPR006163
- InterPro:   IPR006162 [H]

Pfam domain/function: PF00550 PP-binding [H]

EC number: NA

Molecular weight: Translated: 11485; Mature: 11354

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50075 ACP_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPGGAAKPLSHATESGATGNRVESESGESVSTIGEITTATELTSLGVDSLGLADLLWD
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VEQAYDIKIDMTRLTPGRISRMSATWWKPSAVCSRRRSDWTGESSLLG
HHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TIPGGAAKPLSHATESGATGNRVESESGESVSTIGEITTATELTSLGVDSLGLADLLWD
CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VEQAYDIKIDMTRLTPGRISRMSATWWKPSAVCSRRRSDWTGESSLLG
HHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3020515; 11481432 [H]