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The map label for this gene is ydhC [H]

Identifier: 13474760

GI number: 13474760

Start: 4606892

End: 4607593

Strand: Direct

Name: ydhC [H]

Synonym: mlr5721

Alternate gene names: 13474760

Gene position: 4606892-4607593 (Clockwise)

Preceding gene: 13474756

Following gene: 13474761

Centisome position: 65.48

GC content: 61.82

Gene sequence:

>702_bases
ATGCAGGCCGCGAACTCAACCGACACGACCGAAATGACCGCTGCCGGCGGTCGCATCCAGCGCTCGAACAGCCTGGTCGA
GGATGTCTATGAAGCGATCTTCGCGCAGCTGATGGCGCTGAAGATCGCGCCGGGTTCGCGCATCACCGTCGACAGCCTGG
TCAAGGAATTCAACGTCTCGCACACGCCGATCCGCGAGGCGCTCGGCCGCCTCGAAGGCGAAGGCCTGGTGCTCAAGACG
CACCTGATCGGCTATCGCGCGGCACCGCAAATCACGCGGCGCCGCTTCGACGAATTGTACGAGATGCGCCTTCTGCTTGA
GCCGCATGCCGCGGCGAAAGCCGCCGCTGCCATGGATGAAGCCAAGCTCAACATTTTGCTGGAAGCAGCCGGTGTGATGT
CACGGCGCGAAGGCAAGGACGAGCGCCTGCGCTATTCGAATTTCGCCCGGCAGGACGCGATCTTCCACGACAAGATCATG
GAGTTTTCCGAAAACGAACTCATTCGGCAGACGTTGAGCCACCAGCACACCCACTTCCACATCTTCCGCCTGATGTATCA
TGCCCGCGTGACCGAGGAAGCGCTCGACGAACACGAGGCGATCCTCGCCGCGTTCGGCGCGGCCGATCCCGATGCTGCCC
AAAAGGCGATGCGCATCCACATCGAGCATTCGCGCGATCGATTGCTTCCGGCCTTCGATTGA

Upstream 100 bases:

>100_bases
ACGGTTCGAAAAAAGATATCCGCTTTAAAATCGTATAGGATATAGGATTGTATCTGCTGGAGCATCGTGTTAGCAGTCCG
CACTGTCAAGAGGTAAAAAA

Downstream 100 bases:

>100_bases
GGTCGGAGTCGATGTCCATTGCCGCGAACATCGCTGGAGAGGGAGGAAGCACCCTGCCTTTTGCTGGCGTGCCGGGCGCC
GTCGAACCGGTGCTGCGCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MQAANSTDTTEMTAAGGRIQRSNSLVEDVYEAIFAQLMALKIAPGSRITVDSLVKEFNVSHTPIREALGRLEGEGLVLKT
HLIGYRAAPQITRRRFDELYEMRLLLEPHAAAKAAAAMDEAKLNILLEAAGVMSRREGKDERLRYSNFARQDAIFHDKIM
EFSENELIRQTLSHQHTHFHIFRLMYHARVTEEALDEHEAILAAFGAADPDAAQKAMRIHIEHSRDRLLPAFD

Sequences:

>Translated_233_residues
MQAANSTDTTEMTAAGGRIQRSNSLVEDVYEAIFAQLMALKIAPGSRITVDSLVKEFNVSHTPIREALGRLEGEGLVLKT
HLIGYRAAPQITRRRFDELYEMRLLLEPHAAAKAAAAMDEAKLNILLEAAGVMSRREGKDERLRYSNFARQDAIFHDKIM
EFSENELIRQTLSHQHTHFHIFRLMYHARVTEEALDEHEAILAAFGAADPDAAQKAMRIHIEHSRDRLLPAFD
>Mature_233_residues
MQAANSTDTTEMTAAGGRIQRSNSLVEDVYEAIFAQLMALKIAPGSRITVDSLVKEFNVSHTPIREALGRLEGEGLVLKT
HLIGYRAAPQITRRRFDELYEMRLLLEPHAAAKAAAAMDEAKLNILLEAAGVMSRREGKDERLRYSNFARQDAIFHDKIM
EFSENELIRQTLSHQHTHFHIFRLMYHARVTEEALDEHEAILAAFGAADPDAAQKAMRIHIEHSRDRLLPAFD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=200, Percent_Identity=30.5, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26330; Mature: 26330

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAANSTDTTEMTAAGGRIQRSNSLVEDVYEAIFAQLMALKIAPGSRITVDSLVKEFNVS
CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
HTPIREALGRLEGEGLVLKTHLIGYRAAPQITRRRFDELYEMRLLLEPHAAAKAAAAMDE
CCHHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AKLNILLEAAGVMSRREGKDERLRYSNFARQDAIFHDKIMEFSENELIRQTLSHQHTHFH
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
IFRLMYHARVTEEALDEHEAILAAFGAADPDAAQKAMRIHIEHSRDRLLPAFD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCC
>Mature Secondary Structure
MQAANSTDTTEMTAAGGRIQRSNSLVEDVYEAIFAQLMALKIAPGSRITVDSLVKEFNVS
CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
HTPIREALGRLEGEGLVLKTHLIGYRAAPQITRRRFDELYEMRLLLEPHAAAKAAAAMDE
CCHHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AKLNILLEAAGVMSRREGKDERLRYSNFARQDAIFHDKIMEFSENELIRQTLSHQHTHFH
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
IFRLMYHARVTEEALDEHEAILAAFGAADPDAAQKAMRIHIEHSRDRLLPAFD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]