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The map label for this gene is ygeK [C]

Identifier: 13474495

GI number: 13474495

Start: 4306476

End: 4308029

Strand: Reverse

Name: ygeK [C]

Synonym: mll5392

Alternate gene names: 13474495

Gene position: 4308029-4306476 (Counterclockwise)

Preceding gene: 13474496

Following gene: 13474494

Centisome position: 61.23

GC content: 66.47

Gene sequence:

>1554_bases
GTGAGGCCGATCGAGACCCGATATGCCCTCAGTGGCGAGGCGCGGATCGCCTATCAGGTGGTCGGCCAGGGTTCGCTTGA
TCTTGTCTTCGTGCCGGGCTTCATTTCCAATCTCGACCTGCATTGGGAAGACGAAGGCTATACAAGGCTCTTGAGACGGC
TGTCGGCATTCTCGCGGCTGATCCTGTTCGACAAGCGCGGCACCGGCCTTTCCGACCGTGTCGATGCGCACAACCTACCC
AGTCTGGAAACGCGTATGGACGATGTGCGCGCGGTGATGGACGCCGCCGGCAGCGGTCGTGCTGCCCTGCTTGGCGCTTC
GGAAGGCGCGCCAATGGCCATGCTGTTCGCCGCCACCTATCCCGAGCGGACGCGCGCGCTGGCGCTCTATGGTGGATATG
CGCATTTCCACAAATGGGTGATGCCGCCCGAACGCCTCAACGCCTTTATCGCCACGGCCGAGACGGCCTGGGGCACCGGT
GCCACCTTGCCGAATTTCGCGCCGGGCCGGGTCGACGACGCGCATTTCACCCAGTGGTGGGCGCGATTCGAGCGGCTGTC
GGCGAGCCCGACGGCAGCGGCGGCACTGGCGCGAATGAATGCGGAAATCGATGTGCGTGGTGTGCTGGCGGCGATCAGTG
CCCCGACTCTGCTGATCCATCGCCGCAACGATGCGCGGGTCGATCCCGACGCCAGCCGCTTCCTGGCCAAGAAAATCCCG
AATGCGCGACTGGTCGAGATTCCGGGTCGTGACCATCCGATCTGGACCGGCGATGTCGACCGGGTCGCCGACCTGATCGA
GGAGTTCCTGACCGGCACGCGCGCCGTCGCCGAAGCGGACCGTGTGCTGGCGGCACTTCTGGTGACGCGCATCTACGACA
CGACGCGGATGGGCGACCGTATGTGGAGCGAGCGCAGCGAGCGCTTCCAGGAAACCTGGCGGTTGCTGGTCGGGCGCCAT
GGCGGCCGAGCGCTGGGCACGCAGGGCGAGATGATGATTTCGCGCTTCGATGGGCCGGCGCGCGCGATACGCTGTGCAGC
GGCGCTGCGCGAGGCAGCTCAAGGGATCGGCGTGGCCAGCGCGCAGGGCGTGCATGTCGGGGAGATCGAACTGCGCGGGC
CGCCAGTGGGGTTGACGGCCCGCGTGACGATGCAGCTCGCCGCGCACGCCAGCCGGAGCGATATCCTGGCGTCGCGGCTG
GTCGCGGATCTGGCAACCGGCTCAGGCCTGCATTTCGAAGACGCCAGCCGGATCACGCTGGACGATCTGGACGAGCCGAT
GGCGCTGGTGCGGGCAATGTCGGAACAGCACCTGGAGCCTGACTGCCGCGTCAGGACCAAAACGACCGAACCGGCCGTGC
TGACGGCGAGGGAAAGCGAGGTGGTGAGCCTGATTGCCGACGGCAAGAGCAATGCCGCGATTGCAGCCGAGCTCAGGCTG
AGCGAACACACGGTCAAGCGCCACGTCGCCAACATATTGCTCAAGCTCGACCTGCCGTCGCGAGCGGCGGCGGCAGTATT
CTCGGTCCGACACACTGGCCCGGACGGGCCATGA

Upstream 100 bases:

>100_bases
CCGGACATACATTCACCTTCGCTAAAGTTTGAGCTGCCCTATCGAAGCGGCTCTGCTATGGTTGACGATCAGAAGTCGTC
AGGCCGGGCGGAAGAAACTC

Downstream 100 bases:

>100_bases
GAGCCATGGCGCTTTCGGGCGAAGCGGCCAGACGGATGTAAGCGCTATCAATTCCCCCATGCAGGCCAGGCGGATATCGC
CGGAAGGGCACTGCGAACGG

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator CadC; Transcriptional Regulator SARP Family; Lignin Peroxidase LipJ; Hydrolase Alpha/Beta Hydrolase Fold Family Protein; Two-Component System Response Regulator; LuxR Family Transcriptional Regulator; Adenylate/Guanylate Cyclase; Transcriptional Regulator LuxR Family; Alpha/Beta Hydrolase Fold; Protein Kinase; Hydrolase Alpha/Beta Fold Family Protein; Hydrolase And Adenylate/Guanylate Cyclase

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MRPIETRYALSGEARIAYQVVGQGSLDLVFVPGFISNLDLHWEDEGYTRLLRRLSAFSRLILFDKRGTGLSDRVDAHNLP
SLETRMDDVRAVMDAAGSGRAALLGASEGAPMAMLFAATYPERTRALALYGGYAHFHKWVMPPERLNAFIATAETAWGTG
ATLPNFAPGRVDDAHFTQWWARFERLSASPTAAAALARMNAEIDVRGVLAAISAPTLLIHRRNDARVDPDASRFLAKKIP
NARLVEIPGRDHPIWTGDVDRVADLIEEFLTGTRAVAEADRVLAALLVTRIYDTTRMGDRMWSERSERFQETWRLLVGRH
GGRALGTQGEMMISRFDGPARAIRCAAALREAAQGIGVASAQGVHVGEIELRGPPVGLTARVTMQLAAHASRSDILASRL
VADLATGSGLHFEDASRITLDDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADGKSNAAIAAELRL
SEHTVKRHVANILLKLDLPSRAAAAVFSVRHTGPDGP

Sequences:

>Translated_517_residues
MRPIETRYALSGEARIAYQVVGQGSLDLVFVPGFISNLDLHWEDEGYTRLLRRLSAFSRLILFDKRGTGLSDRVDAHNLP
SLETRMDDVRAVMDAAGSGRAALLGASEGAPMAMLFAATYPERTRALALYGGYAHFHKWVMPPERLNAFIATAETAWGTG
ATLPNFAPGRVDDAHFTQWWARFERLSASPTAAAALARMNAEIDVRGVLAAISAPTLLIHRRNDARVDPDASRFLAKKIP
NARLVEIPGRDHPIWTGDVDRVADLIEEFLTGTRAVAEADRVLAALLVTRIYDTTRMGDRMWSERSERFQETWRLLVGRH
GGRALGTQGEMMISRFDGPARAIRCAAALREAAQGIGVASAQGVHVGEIELRGPPVGLTARVTMQLAAHASRSDILASRL
VADLATGSGLHFEDASRITLDDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADGKSNAAIAAELRL
SEHTVKRHVANILLKLDLPSRAAAAVFSVRHTGPDGP
>Mature_517_residues
MRPIETRYALSGEARIAYQVVGQGSLDLVFVPGFISNLDLHWEDEGYTRLLRRLSAFSRLILFDKRGTGLSDRVDAHNLP
SLETRMDDVRAVMDAAGSGRAALLGASEGAPMAMLFAATYPERTRALALYGGYAHFHKWVMPPERLNAFIATAETAWGTG
ATLPNFAPGRVDDAHFTQWWARFERLSASPTAAAALARMNAEIDVRGVLAAISAPTLLIHRRNDARVDPDASRFLAKKIP
NARLVEIPGRDHPIWTGDVDRVADLIEEFLTGTRAVAEADRVLAALLVTRIYDTTRMGDRMWSERSERFQETWRLLVGRH
GGRALGTQGEMMISRFDGPARAIRCAAALREAAQGIGVASAQGVHVGEIELRGPPVGLTARVTMQLAAHASRSDILASRL
VADLATGSGLHFEDASRITLDDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADGKSNAAIAAELRL
SEHTVKRHVANILLKLDLPSRAAAAVFSVRHTGPDGP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56332; Mature: 56332

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPIETRYALSGEARIAYQVVGQGSLDLVFVPGFISNLDLHWEDEGYTRLLRRLSAFSRL
CCCCCCCEEECCCCEEEEEEECCCCEEEEECCCHHCCCCEEECCCHHHHHHHHHHHHHHE
ILFDKRGTGLSDRVDAHNLPSLETRMDDVRAVMDAAGSGRAALLGASEGAPMAMLFAATY
EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECC
PERTRALALYGGYAHFHKWVMPPERLNAFIATAETAWGTGATLPNFAPGRVDDAHFTQWW
CCHHEEEEEECCHHHHHHCCCCHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
ARFERLSASPTAAAALARMNAEIDVRGVLAAISAPTLLIHRRNDARVDPDASRFLAKKIP
HHHHHCCCCCHHHHHHHHHCCCEEHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCC
NARLVEIPGRDHPIWTGDVDRVADLIEEFLTGTRAVAEADRVLAALLVTRIYDTTRMGDR
CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MWSERSERFQETWRLLVGRHGGRALGTQGEMMISRFDGPARAIRCAAALREAAQGIGVAS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCC
AQGVHVGEIELRGPPVGLTARVTMQLAAHASRSDILASRLVADLATGSGLHFEDASRITL
CCCEEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
DDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADGKSNAAIAAELRL
HCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCHHEEEEEECCCCCCEEEEEEHH
SEHTVKRHVANILLKLDLPSRAAAAVFSVRHTGPDGP
HHHHHHHHHHHEEEEECCCCHHHHHHHEEECCCCCCC
>Mature Secondary Structure
MRPIETRYALSGEARIAYQVVGQGSLDLVFVPGFISNLDLHWEDEGYTRLLRRLSAFSRL
CCCCCCCEEECCCCEEEEEEECCCCEEEEECCCHHCCCCEEECCCHHHHHHHHHHHHHHE
ILFDKRGTGLSDRVDAHNLPSLETRMDDVRAVMDAAGSGRAALLGASEGAPMAMLFAATY
EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECC
PERTRALALYGGYAHFHKWVMPPERLNAFIATAETAWGTGATLPNFAPGRVDDAHFTQWW
CCHHEEEEEECCHHHHHHCCCCHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
ARFERLSASPTAAAALARMNAEIDVRGVLAAISAPTLLIHRRNDARVDPDASRFLAKKIP
HHHHHCCCCCHHHHHHHHHCCCEEHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCC
NARLVEIPGRDHPIWTGDVDRVADLIEEFLTGTRAVAEADRVLAALLVTRIYDTTRMGDR
CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MWSERSERFQETWRLLVGRHGGRALGTQGEMMISRFDGPARAIRCAAALREAAQGIGVAS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCC
AQGVHVGEIELRGPPVGLTARVTMQLAAHASRSDILASRLVADLATGSGLHFEDASRITL
CCCEEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
DDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADGKSNAAIAAELRL
HCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCHHEEEEEECCCCCCEEEEEEHH
SEHTVKRHVANILLKLDLPSRAAAAVFSVRHTGPDGP
HHHHHHHHHHHEEEEECCCCHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA