Click here to switch to the map view.

The map label for this gene is spsL [H]

Identifier: 13474438

GI number: 13474438

Start: 4245652

End: 4246182

Strand: Reverse

Name: spsL [H]

Synonym: mll5319

Alternate gene names: 13474438

Gene position: 4246182-4245652 (Counterclockwise)

Preceding gene: 13474439

Following gene: 13474437

Centisome position: 60.35

GC content: 55.56

Gene sequence:

>531_bases
ATGGACAGGCTGTCACTCGAAGATTTTGTTGATGATCAGCCTTGGGGAGACAACGTTCCGCTTCTGGAAGACATTTCCAG
TGAAAATCCGATAGCGGGCGTTCGGATGCAGCGGCTGGTTACAAGGGGCGACAAGCGTGGCGAGCTTACGGTCCTCATGT
CGGCACTGCTGGAGCCCATAACCCCGCCGCCACATGTCTATCTGGTATCGGCCGAGGCGGGATCGATCAGGGCGTGGGTC
TATCACAAGCGACAGTTCGACCGGCTCGCCTATACAAATGGCGACCTCAGGGTCGTACTCTACGATCTGCGCGAGGATAG
CCCGACATACCAAAAACTGGAGGTACTCGACGTCGGTGCGGCGAACAAGATCCTGCTGACGATTCCGCCCTATGTCGTTC
ACGGGATTCAGAATCGGGGCAAGAGCACCGCGACATTCATCAACATGCCGACAACCGTCTACGATCCCAAGCATCCGGAC
AAATCACGAATCCCCTTCGATCATCCGGGCATCCCTTACAAATTCGAATAA

Upstream 100 bases:

>100_bases
GCTAGTGCCGAGGCGCCATCGCCTCTTCGTGTATTGCCTTTGGCGCCGACTGACAGCAGGACAAGCCTAGATTGCGTTGC
CACTAACGCTGGAGGGCTCG

Downstream 100 bases:

>100_bases
ATGACCACGTTTTCCGTCATCATGGCCACCTACAATCGCGGCAGACATATTCTTCCGTCGATACAATCGGTGCTGCGCCA
AACCTGCCGGGACTTCGAGC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MDRLSLEDFVDDQPWGDNVPLLEDISSENPIAGVRMQRLVTRGDKRGELTVLMSALLEPITPPPHVYLVSAEAGSIRAWV
YHKRQFDRLAYTNGDLRVVLYDLREDSPTYQKLEVLDVGAANKILLTIPPYVVHGIQNRGKSTATFINMPTTVYDPKHPD
KSRIPFDHPGIPYKFE

Sequences:

>Translated_176_residues
MDRLSLEDFVDDQPWGDNVPLLEDISSENPIAGVRMQRLVTRGDKRGELTVLMSALLEPITPPPHVYLVSAEAGSIRAWV
YHKRQFDRLAYTNGDLRVVLYDLREDSPTYQKLEVLDVGAANKILLTIPPYVVHGIQNRGKSTATFINMPTTVYDPKHPD
KSRIPFDHPGIPYKFE
>Mature_176_residues
MDRLSLEDFVDDQPWGDNVPLLEDISSENPIAGVRMQRLVTRGDKRGELTVLMSALLEPITPPPHVYLVSAEAGSIRAWV
YHKRQFDRLAYTNGDLRVVLYDLREDSPTYQKLEVLDVGAANKILLTIPPYVVHGIQNRGKSTATFINMPTTVYDPKHPD
KSRIPFDHPGIPYKFE

Specific function: Unknown

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To dTDP-4-dehydrorhamnose reductase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: NA

Molecular weight: Translated: 19970; Mature: 19970

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLSLEDFVDDQPWGDNVPLLEDISSENPIAGVRMQRLVTRGDKRGELTVLMSALLEPI
CCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
TPPPHVYLVSAEAGSIRAWVYHKRQFDRLAYTNGDLRVVLYDLREDSPTYQKLEVLDVGA
CCCCEEEEEECCCCCEEEEEEEHHHHHHHEEECCCEEEEEEECCCCCCCCEEEEEEECCC
ANKILLTIPPYVVHGIQNRGKSTATFINMPTTVYDPKHPDKSRIPFDHPGIPYKFE
CCEEEEEECHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure
MDRLSLEDFVDDQPWGDNVPLLEDISSENPIAGVRMQRLVTRGDKRGELTVLMSALLEPI
CCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
TPPPHVYLVSAEAGSIRAWVYHKRQFDRLAYTNGDLRVVLYDLREDSPTYQKLEVLDVGA
CCCCEEEEEECCCCCEEEEEEEHHHHHHHEEECCCEEEEEEECCCCCCCCEEEEEEECCC
ANKILLTIPPYVVHGIQNRGKSTATFINMPTTVYDPKHPDKSRIPFDHPGIPYKFE
CCEEEEEECHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]