Click here to switch to the map view.

The map label for this gene is holA

Identifier: 13473770

GI number: 13473770

Start: 3559318

End: 3560361

Strand: Direct

Name: holA

Synonym: mlr4475

Alternate gene names: NA

Gene position: 3559318-3560361 (Clockwise)

Preceding gene: 13473765

Following gene: 13473777

Centisome position: 50.59

GC content: 68.49

Gene sequence:

>1044_bases
ATGGCACAGAAGAAAGCTTTCGAGGTCGATTCCTGGCTCGCGCGGCCTGACGCGCGCATCTCCATCGTCCTGCTCTACGG
CCCCGATCGCGGCCTCGTCTCCGAGCGTGCAAAGGCCTTTGCCGAAAAGACCGGCCTGCCGCTCGACGATCCGTTTTCCG
TGGTCCGGCTCGAGGGGTCGGAGGTCGACCGCGACGAAGGCCGGCTGCTCGACGAAGCCCGCACCGTGCCGATGTTTTCC
GACCGCCGCCTGCTCTGGGTGCGCAATGCCACCGGCCAGAAGGCGCTGGCCGAGGACGTCAAGGCGCTGACAGCGGAGCC
CGCGCGCGATGCCATCATCCTCATCGAGGCCGGCGACCTCAAGAAGGGCGTCGGCTTGCGCGCCGTGGTCGAGGGCGCCG
ACAATGCCATGGCGCTGCCTTGCTACGCCGACGAGGCCCGCGACATCGACACGGTCATCGACGATGAATTGCGCAAGGCC
GGCATGTCGATGACGCTGGAGGCGAGGCAGGCGCTGCGCCGCAATCTCGGCGGCGACAGGCTCGCTTCGCGCGGCGAGAT
CGAAAAACTCATCCTCTACGCCCACGGCCAGAAGGAGATCGGCCTGGAGGATGTCAGGGCGATGTCGGGCGACGTGTCCG
GCACCTCGTTCGACGACGCCGTCGACGCGCTGCTGGAAGGCAAGGTCGGCGACTTCGACACCGCCTTCACCCGCCACTGC
CAGTCCGGCGGCCCACCCTTCCTGGTGCTGTCCTCGGCGATGCGCCAGCTGCAGCAGATCCAAATCATGCGCGGCCAGAT
GGACTCTGGCGGGCGCAATGCCGCGTCGGTGGTCGCCGCCGCGCGCCCGCCGGTTTTCTTTTCGCGGCGCAAGCTGGTGG
AGAAGGCGCTCGAGCGCTGGAGCAGCGATGCGCTGAGCCGCGCGCTAACCCGGCTGCAGACCGCGGTGCTGCAGACCCGC
AAACGGCCCGATCTGTCAGAGGCGCTGGCGCGCCAGGCGCTGCTCGGCATTGCGGTGGAGAGCGCGAGGCTGGGGCAGCG
TTAG

Upstream 100 bases:

>100_bases
GGCGATTCACTGCGCTGCGGTTGAAGCCGCCAATCTCCCCCCTCGTGGGGGGAGATCGAACTCTGTTCACGCCGCGCCAA
CATCATGCTAACCACCCCCC

Downstream 100 bases:

>100_bases
GCCAGCGATCCTCCCGTGCTACTCGCCGGACCAATTGATCGGGGCGTAATGTCCGTTTTGGCCGGAATTGTCCCAGCTCA
TGCCATGGTCGCTGAATGTA

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Delta Subunit; DNA Polymerase III Delta

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MAQKKAFEVDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFS
DRRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDLKKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKA
GMSMTLEARQALRRNLGGDRLASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRHC
QSGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERWSSDALSRALTRLQTAVLQTR
KRPDLSEALARQALLGIAVESARLGQR

Sequences:

>Translated_347_residues
MAQKKAFEVDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFS
DRRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDLKKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKA
GMSMTLEARQALRRNLGGDRLASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRHC
QSGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERWSSDALSRALTRLQTAVLQTR
KRPDLSEALARQALLGIAVESARLGQR
>Mature_346_residues
AQKKAFEVDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD
RRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDLKKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKAG
MSMTLEARQALRRNLGGDRLASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRHCQ
SGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERWSSDALSRALTRLQTAVLQTRK
RPDLSEALARQALLGIAVESARLGQR

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 37897; Mature: 37766

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKKAFEVDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGS
CCCCHHCCHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCC
EVDRDEGRLLDEARTVPMFSDRRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDL
CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
KKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGDR
CCCCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCHH
LASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRHC
HCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
QSGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERW
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
SSDALSRALTRLQTAVLQTRKRPDLSEALARQALLGIAVESARLGQR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AQKKAFEVDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGS
CCCHHCCHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCC
EVDRDEGRLLDEARTVPMFSDRRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDL
CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
KKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGDR
CCCCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCHH
LASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRHC
HCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
QSGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERW
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
SSDALSRALTRLQTAVLQTRKRPDLSEALARQALLGIAVESARLGQR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA