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The map label for this gene is ydcH [H]

Identifier: 13473708

GI number: 13473708

Start: 3490067

End: 3490522

Strand: Direct

Name: ydcH [H]

Synonym: mlr4398

Alternate gene names: 13473708

Gene position: 3490067-3490522 (Clockwise)

Preceding gene: 13473707

Following gene: 13473712

Centisome position: 49.6

GC content: 68.42

Gene sequence:

>456_bases
GTGGCTGATGGACAGGATTTGAAGACGCGCTTCAGCGGACCTTCGGAGAGCCCCGGCTTGTTGTTGTGGCGAACCACCAT
GCGCTGGCAGCGCGTCATGACGGCGGCATTGGCGCCGCTCGACCTGACGCATGTCCAGTTCGTGCTCTTGGCATCGGCCA
TGTGGCTCGGCCGCAATGGCGAGCCGCCCAACCAGGTGCAGCTCGCCGCCCAGGCCGGCACCGAGGTGAAGATGACCTCG
GACGTCGTTGCCCGGCTCGAGGCCAAGGGTTTGATCGCGCGCGAAGCCGACCCCAGGGATTCGCGCGCCAAGGTGATCCG
CGTCACCCCGGCCGGGGCCGCCGCCGCGCGGCGCGCCATCGTTGCCGTGGAGACCGCCGACGCGGCCTTTTTCGAACCGG
TGGACGAAGCGCAACTCGTCGGCCTGCTGCAGCAACTGGCCGGCGAGATTCGCTAG

Upstream 100 bases:

>100_bases
TCTGCCGCCGAGGTCGGACCGGAGCTCGGCCCGCAGATCAGCGGCGATTTCGACGTGTCGATGGCTAAATTGTTCGAGCA
GGCAAAGGAGTTGGCGAACG

Downstream 100 bases:

>100_bases
AGCAATTCCAGGAAAAGTGTGAGCGGTTTTCCGTCCGGAATTGCGTCAAAACAAGAGTTAGATCGGTTCGCCGTTTCCAT
GAAACGGTGAAACGCTCTGA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MADGQDLKTRFSGPSESPGLLLWRTTMRWQRVMTAALAPLDLTHVQFVLLASAMWLGRNGEPPNQVQLAAQAGTEVKMTS
DVVARLEAKGLIAREADPRDSRAKVIRVTPAGAAAARRAIVAVETADAAFFEPVDEAQLVGLLQQLAGEIR

Sequences:

>Translated_151_residues
MADGQDLKTRFSGPSESPGLLLWRTTMRWQRVMTAALAPLDLTHVQFVLLASAMWLGRNGEPPNQVQLAAQAGTEVKMTS
DVVARLEAKGLIAREADPRDSRAKVIRVTPAGAAAARRAIVAVETADAAFFEPVDEAQLVGLLQQLAGEIR
>Mature_150_residues
ADGQDLKTRFSGPSESPGLLLWRTTMRWQRVMTAALAPLDLTHVQFVLLASAMWLGRNGEPPNQVQLAAQAGTEVKMTSD
VVARLEAKGLIAREADPRDSRAKVIRVTPAGAAAARRAIVAVETADAAFFEPVDEAQLVGLLQQLAGEIR

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16259; Mature: 16128

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50995 HTH_MARR_2 ; PS00104 EPSP_SYNTHASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADGQDLKTRFSGPSESPGLLLWRTTMRWQRVMTAALAPLDLTHVQFVLLASAMWLGRNG
CCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
EPPNQVQLAAQAGTEVKMTSDVVARLEAKGLIAREADPRDSRAKVIRVTPAGAAAARRAI
CCCHHEEEEECCCCEEEEHHHHHHHHHHCCCEECCCCCCCCCCEEEEECCCCHHHHHHEE
VAVETADAAFFEPVDEAQLVGLLQQLAGEIR
EEEEECCCHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADGQDLKTRFSGPSESPGLLLWRTTMRWQRVMTAALAPLDLTHVQFVLLASAMWLGRNG
CCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
EPPNQVQLAAQAGTEVKMTSDVVARLEAKGLIAREADPRDSRAKVIRVTPAGAAAARRAI
CCCHHEEEEECCCCEEEEHHHHHHHHHHCCCEECCCCCCCCCCEEEEECCCCHHHHHHEE
VAVETADAAFFEPVDEAQLVGLLQQLAGEIR
EEEEECCCHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]