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The map label for this gene is rhtB [H]

Identifier: 13473683

GI number: 13473683

Start: 3466112

End: 3466753

Strand: Reverse

Name: rhtB [H]

Synonym: mll4363

Alternate gene names: 13473683

Gene position: 3466753-3466112 (Counterclockwise)

Preceding gene: 13473684

Following gene: 13473679

Centisome position: 49.27

GC content: 64.8

Gene sequence:

>642_bases
ATGTCCTTCATTCCCGACACCGCCACGCTGATCCAGTTCGCCATCGCCACGGTCATCCTGGCGATCACGCCCGGGCCGGA
CATGACCCTGTTCGTTTCGCGCACGCTGAGCCAGGGGCGCGCCACCGGCTTTGCCTCGATGGCGGGCGCGCTGTGCGGCA
CGCTGATCCACACCACGCTGGTGGTGGTCGGGGTCTCGGCGCTGATCGTCGCCTCGCCGATGGCCTTCTTCGTGCTGAAG
ATCTTTGGCGCCGGCTATCTCGTCTTCCTGGCCTGGCAGGCCATCGCCAAGGGCTCGGCCTTTTCGCCGGAGAAGAAGAC
AGGCCCGCAAATCTCGCTGCTGCGCAGCTGGGCGGCCGGGCTCGGCGTCAATTTGCTCAACCCGAAGATCATCCTGTTCT
TCATGACCTTCCTGCCGCAATTCGTCTCCGCGCATGATCCGCACGCGCCGGGCAAGCTGTTCTTCCTGGGCTTGATGTTC
ATCGTGCTGTCGATCCCGGTGACGGCGCCGATGGTGCTGGCGGCAGAGAAATTCTCCGCGGCGATGAAGGCCAGCCCGCG
CGTCACGCGGGTGGTCGACTATCTCTTCGCCGGCGTGTTCTCAGCCTTCGCGCTCAAGATCCTGACGGCCCAGGCGAAGT
AG

Upstream 100 bases:

>100_bases
GAACTGTAGTTGCCGAAGCGATTGCCATGCTGGATCAATGCTTTGTCTGGCGCCGTCACACCGCATCCTGTATAGGCCTA
CGCGTTCCCTGGGGCCTGCC

Downstream 100 bases:

>100_bases
AGGCGCTCTCGTCCTTCCACCAGCTTCCGGCCCAGCGCCCGGCGCTCAGCCAGTAGAAGATGCCGCCGACCATGCCGCCG
CCGATCACCGCCATGATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSFIPDTATLIQFAIATVILAITPGPDMTLFVSRTLSQGRATGFASMAGALCGTLIHTTLVVVGVSALIVASPMAFFVLK
IFGAGYLVFLAWQAIAKGSAFSPEKKTGPQISLLRSWAAGLGVNLLNPKIILFFMTFLPQFVSAHDPHAPGKLFFLGLMF
IVLSIPVTAPMVLAAEKFSAAMKASPRVTRVVDYLFAGVFSAFALKILTAQAK

Sequences:

>Translated_213_residues
MSFIPDTATLIQFAIATVILAITPGPDMTLFVSRTLSQGRATGFASMAGALCGTLIHTTLVVVGVSALIVASPMAFFVLK
IFGAGYLVFLAWQAIAKGSAFSPEKKTGPQISLLRSWAAGLGVNLLNPKIILFFMTFLPQFVSAHDPHAPGKLFFLGLMF
IVLSIPVTAPMVLAAEKFSAAMKASPRVTRVVDYLFAGVFSAFALKILTAQAK
>Mature_212_residues
SFIPDTATLIQFAIATVILAITPGPDMTLFVSRTLSQGRATGFASMAGALCGTLIHTTLVVVGVSALIVASPMAFFVLKI
FGAGYLVFLAWQAIAKGSAFSPEKKTGPQISLLRSWAAGLGVNLLNPKIILFFMTFLPQFVSAHDPHAPGKLFFLGLMFI
VLSIPVTAPMVLAAEKFSAAMKASPRVTRVVDYLFAGVFSAFALKILTAQAK

Specific function: Conducts the efflux of homoserine and homoserine lactone [H]

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

Organism=Escherichia coli, GI1788099, Length=203, Percent_Identity=25.1231527093596, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI48994979, Length=188, Percent_Identity=29.7872340425532, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786522, Length=200, Percent_Identity=25.5, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004778
- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 22571; Mature: 22440

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFIPDTATLIQFAIATVILAITPGPDMTLFVSRTLSQGRATGFASMAGALCGTLIHTTL
CCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVGVSALIVASPMAFFVLKIFGAGYLVFLAWQAIAKGSAFSPEKKTGPQISLLRSWAAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
LGVNLLNPKIILFFMTFLPQFVSAHDPHAPGKLFFLGLMFIVLSIPVTAPMVLAAEKFSA
CCCHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AMKASPRVTRVVDYLFAGVFSAFALKILTAQAK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFIPDTATLIQFAIATVILAITPGPDMTLFVSRTLSQGRATGFASMAGALCGTLIHTTL
CCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVGVSALIVASPMAFFVLKIFGAGYLVFLAWQAIAKGSAFSPEKKTGPQISLLRSWAAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
LGVNLLNPKIILFFMTFLPQFVSAHDPHAPGKLFFLGLMFIVLSIPVTAPMVLAAEKFSA
CCCHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AMKASPRVTRVVDYLFAGVFSAFALKILTAQAK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]