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The map label for this gene is ybdA [C]

Identifier: 13473570

GI number: 13473570

Start: 3366425

End: 3367663

Strand: Direct

Name: ybdA [C]

Synonym: mlr4214

Alternate gene names: 13473570

Gene position: 3366425-3367663 (Clockwise)

Preceding gene: 13473569

Following gene: 13473571

Centisome position: 47.85

GC content: 65.86

Gene sequence:

>1239_bases
ATGACATCCCTACAAACTTCACCTGAGCAGCGTTACGCTGCCTTCCGGCACAAAGCCTTCCTCAGCTACTGGACGGCGCG
CTTTCTCACCACTTTCGCGACCATGGTCGTCTCCGTCGCTGTCGGCTGGCAGATGTACGACCTGACCCGCGATCCGTTCG
ACCTTGGCATTGTCGGCATCGTCCAGTTCCTGCCATCACTGCTCTTGGTGCTGGTCACAGGCGCTGTCGCCGACCGCTTC
GGCCGCCGCCTGATCATGGCGCTGGCGGTGGTGGTGGAGGCGATCTGCGCCCTGGCGCTGCTCGCGCTGACGCTGCGCAG
CATCAGCGGACCGCTGCCGATCTTCTGCGTGCTGGCCATGTTCGGCGTGGCGCGCGCCTTCTTCGGTCCGGCATCGGCCT
CGCTGTTCGCCAATCTGGTGCCGCCTGAGGATTTCGCCAACGCCATCGCCTGGAACTCGTCTGCCTGGCAGACCGCGACC
ATCGTCGGCCCGGTCGCCGGCGGCCTGCTCTATGGCGTGTCGCCGGAGGTGGCCTATGGCACCGCCGCCGTGCTGATGCT
CGCGTCCGGTCTGCTGATCTTCACCATCCCGAAGCCTGCGCAACGCACCGAGACCGAGAAGCCGACGCTGCAGAACCTGT
TTGGCGGGTTCAGCTACATCTGGAGCGAGAAGATCGTGCTCGGCGCCATCTCGCTCGATCTGTTCGCCGTGCTTCTGTCC
GGCGCCTCGGCGCTGCTGCCGGTCTATGCACGCGACATCCTGCAGCTTGGCCCCTGGGGCCTTGGCCTGCTGCGCTCGGC
GCCAAGCATCGGGGCCATCTGCGTCGCAGTCTGGCTGGCCGGCCATCCAATGCGCAACCATGCCGGCATGATCATGCTGG
CCGCCGCCGCGTCGTTCGGCGCCTTCACCGTGCTGTTCGGCCTGTCGACCATCACCTGGCTGTCTATCGCGGCACTCGTC
TTCCTCGGCGCCACCGACATGTTCAGCGTGTATATCAGGGAGACGCTGATCCAGTTGTGGACGCCGGACGAGGTGCGCGG
CCGCGTCAACGCCGTCAACCAGGTCTTCGTCGGCGCCTCCAACGAGGTCGGTGAATTCCGCGCCGGCACGATGGCCGCGC
TGATCGGCACTGTCCCGGCTGTGGTGATCGGCGGCGTCGGCGCCATAGCGGTCGCGGGGCTATGGATGGTGCTGTTCCCG
CAATTGCGCAAGGTTCGCCATCTCAACGGGCGAAACTGA

Upstream 100 bases:

>100_bases
ATCCCGCATCGAACTTTGCTAGACGTTCCATCGGTCGGAACAGCGCCCATCCTTGGGAAGTGCCCCGCCGGCCGATGCCA
TCGCAACGGGGCCTTTATTC

Downstream 100 bases:

>100_bases
CGCTCGCCGATGGTCAGCAAGATACATCACCCCGCACAGGAGCTCCCATGATCACCTGTTACCTGAAATATGTCATCGAC
CCTTACAAGCTTGCCGAGTT

Product: integral membrane protein, MFS transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; DrugProton Antiporter; Facilitator Superfamily Transporter; MFS Permease; Permease Of Facilitator Superfamily; Transporter Facilitator Family; Transmembrane Protein; Membrane Transporter; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Permease Protein; MFS Family Transporter Protein; Permease; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; Siderophore Export Protein; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Resistance Efflux Protein; Facilitator Superfamily Transporter Transporter; Permeases Of Facilitator Superfamily

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MTSLQTSPEQRYAAFRHKAFLSYWTARFLTTFATMVVSVAVGWQMYDLTRDPFDLGIVGIVQFLPSLLLVLVTGAVADRF
GRRLIMALAVVVEAICALALLALTLRSISGPLPIFCVLAMFGVARAFFGPASASLFANLVPPEDFANAIAWNSSAWQTAT
IVGPVAGGLLYGVSPEVAYGTAAVLMLASGLLIFTIPKPAQRTETEKPTLQNLFGGFSYIWSEKIVLGAISLDLFAVLLS
GASALLPVYARDILQLGPWGLGLLRSAPSIGAICVAVWLAGHPMRNHAGMIMLAAAASFGAFTVLFGLSTITWLSIAALV
FLGATDMFSVYIRETLIQLWTPDEVRGRVNAVNQVFVGASNEVGEFRAGTMAALIGTVPAVVIGGVGAIAVAGLWMVLFP
QLRKVRHLNGRN

Sequences:

>Translated_412_residues
MTSLQTSPEQRYAAFRHKAFLSYWTARFLTTFATMVVSVAVGWQMYDLTRDPFDLGIVGIVQFLPSLLLVLVTGAVADRF
GRRLIMALAVVVEAICALALLALTLRSISGPLPIFCVLAMFGVARAFFGPASASLFANLVPPEDFANAIAWNSSAWQTAT
IVGPVAGGLLYGVSPEVAYGTAAVLMLASGLLIFTIPKPAQRTETEKPTLQNLFGGFSYIWSEKIVLGAISLDLFAVLLS
GASALLPVYARDILQLGPWGLGLLRSAPSIGAICVAVWLAGHPMRNHAGMIMLAAAASFGAFTVLFGLSTITWLSIAALV
FLGATDMFSVYIRETLIQLWTPDEVRGRVNAVNQVFVGASNEVGEFRAGTMAALIGTVPAVVIGGVGAIAVAGLWMVLFP
QLRKVRHLNGRN
>Mature_411_residues
TSLQTSPEQRYAAFRHKAFLSYWTARFLTTFATMVVSVAVGWQMYDLTRDPFDLGIVGIVQFLPSLLLVLVTGAVADRFG
RRLIMALAVVVEAICALALLALTLRSISGPLPIFCVLAMFGVARAFFGPASASLFANLVPPEDFANAIAWNSSAWQTATI
VGPVAGGLLYGVSPEVAYGTAAVLMLASGLLIFTIPKPAQRTETEKPTLQNLFGGFSYIWSEKIVLGAISLDLFAVLLSG
ASALLPVYARDILQLGPWGLGLLRSAPSIGAICVAVWLAGHPMRNHAGMIMLAAAASFGAFTVLFGLSTITWLSIAALVF
LGATDMFSVYIRETLIQLWTPDEVRGRVNAVNQVFVGASNEVGEFRAGTMAALIGTVPAVVIGGVGAIAVAGLWMVLFPQ
LRKVRHLNGRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786806, Length=343, Percent_Identity=25.0728862973761, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43852; Mature: 43721

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLQTSPEQRYAAFRHKAFLSYWTARFLTTFATMVVSVAVGWQMYDLTRDPFDLGIVGI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHH
VQFLPSLLLVLVTGAVADRFGRRLIMALAVVVEAICALALLALTLRSISGPLPIFCVLAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FGVARAFFGPASASLFANLVPPEDFANAIAWNSSAWQTATIVGPVAGGLLYGVSPEVAYG
HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHEEHHHHHHHHHCCCCCCHHHH
TAAVLMLASGLLIFTIPKPAQRTETEKPTLQNLFGGFSYIWSEKIVLGAISLDLFAVLLS
HHHHHHHHCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GASALLPVYARDILQLGPWGLGLLRSAPSIGAICVAVWLAGHPMRNHAGMIMLAAAASFG
CCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHH
AFTVLFGLSTITWLSIAALVFLGATDMFSVYIRETLIQLWTPDEVRGRVNAVNQVFVGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCC
NEVGEFRAGTMAALIGTVPAVVIGGVGAIAVAGLWMVLFPQLRKVRHLNGRN
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSLQTSPEQRYAAFRHKAFLSYWTARFLTTFATMVVSVAVGWQMYDLTRDPFDLGIVGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHH
VQFLPSLLLVLVTGAVADRFGRRLIMALAVVVEAICALALLALTLRSISGPLPIFCVLAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FGVARAFFGPASASLFANLVPPEDFANAIAWNSSAWQTATIVGPVAGGLLYGVSPEVAYG
HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHEEHHHHHHHHHCCCCCCHHHH
TAAVLMLASGLLIFTIPKPAQRTETEKPTLQNLFGGFSYIWSEKIVLGAISLDLFAVLLS
HHHHHHHHCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GASALLPVYARDILQLGPWGLGLLRSAPSIGAICVAVWLAGHPMRNHAGMIMLAAAASFG
CCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHH
AFTVLFGLSTITWLSIAALVFLGATDMFSVYIRETLIQLWTPDEVRGRVNAVNQVFVGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCC
NEVGEFRAGTMAALIGTVPAVVIGGVGAIAVAGLWMVLFPQLRKVRHLNGRN
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA