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The map label for this gene is yphD [H]

Identifier: 13473559

GI number: 13473559

Start: 3354522

End: 3355502

Strand: Reverse

Name: yphD [H]

Synonym: mll4202

Alternate gene names: 13473559

Gene position: 3355502-3354522 (Counterclockwise)

Preceding gene: 13473560

Following gene: 13473558

Centisome position: 47.69

GC content: 67.99

Gene sequence:

>981_bases
ATGACCGCCGCCAGCCTCGACACCGCCGCCAGGAGTTCCGCCGAGCGCGGCGCGCTGGCGCGCGCCCGCCTGCTGCGCGG
GCTGCTGCCGGCGCTGTCGCTGGCATTGGTGCTCGCCGCCATAGCCTGGCTCAACCCGCGCGCCATCAGCTATTTCGGCT
TCAGCCTGATGCTGAACCTGGCGATCCCGATCGCGCTGGCGACGATCGCGCAGATGTTCGTCATTTCAGGTAACGAGCTC
GACCTGTCGATCGGCACCTTCGTCGGGTTCGTCGGCTGCGTCACCGCGACCTGGCTGAAGGACGCGCCGCTCATCGGCGT
CGCCATCCTGCTCGGCTCGATCGGCGTCTATGCGCTGCTCGGCGCCCTGATCCATCTGCGCAATCTGCCGTCGATCGTGG
TGACGCTCGGCATGAGTTTCGTCTGGCAGGGGCTGGCCATCCTCGTCCTGCCCAAGCCCGGCGGCAAGGCGCCGGACTGG
CTGCTGGCGATCATGTCGTTCAAGCCGCCTCTCATTCCCTTCCCGATCATCGCGGCACTGCTGATCGGCCTCGTCGTCCA
TTTCGGCCTGATGCGCACCTCCTATGGCGTGATCCTGCGCGGCTCCGGCGGCAATCCGGCCGCGCTCAAGCGTGCCGGTT
GGTCGCTGCTCAGAACCAAGATCGTGCTGTTTGCGCTGGCCGGCCTGTTCGGCGTGCTGTCCGGCATGGCGCTGATCGGC
ATCACCACCTCGGCCGACGCCAATATCGGCAATGGCTACACGCTGCTTTCGATCGCTGGCGTCATCCTCGGCGGCGGCGA
ATTCGTCGGTGGCCGGGTGTCGCCGATCGGCGCGGTGATCGGCGCGCTGACGCTGGCGCTGGCGGCGTCGCCGCTGCTCA
CCTTCATGCACATCCCGCCGGACTGGCAGGTCGCCGCCAACGGCGCCATCCTGATCATCGTGCTGGCGGCGCGGGTGCTG
ATCAGCCGCAGGGAGAGGTGA

Upstream 100 bases:

>100_bases
GTCTATGTCTTCAAGAACGGCCGCATCGTCGCCAATCTGGGTCGCAACGAATTGACCGAAGAGAAGATCATCCAGTCCTC
CTTCGGCGACGCGGCCTGAG

Downstream 100 bases:

>100_bases
GCGATGTCATTGGTTAGATCGCTGGCCGGCAAACCCTGGGTATGGTCGTTCCTCGGCGCGCTTGTCGTGTGGCTGGCGAC
TATCGCCTTCACCGGCGGCT

Product: sugar ABC transporter, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTAASLDTAARSSAERGALARARLLRGLLPALSLALVLAAIAWLNPRAISYFGFSLMLNLAIPIALATIAQMFVISGNEL
DLSIGTFVGFVGCVTATWLKDAPLIGVAILLGSIGVYALLGALIHLRNLPSIVVTLGMSFVWQGLAILVLPKPGGKAPDW
LLAIMSFKPPLIPFPIIAALLIGLVVHFGLMRTSYGVILRGSGGNPAALKRAGWSLLRTKIVLFALAGLFGVLSGMALIG
ITTSADANIGNGYTLLSIAGVILGGGEFVGGRVSPIGAVIGALTLALAASPLLTFMHIPPDWQVAANGAILIIVLAARVL
ISRRER

Sequences:

>Translated_326_residues
MTAASLDTAARSSAERGALARARLLRGLLPALSLALVLAAIAWLNPRAISYFGFSLMLNLAIPIALATIAQMFVISGNEL
DLSIGTFVGFVGCVTATWLKDAPLIGVAILLGSIGVYALLGALIHLRNLPSIVVTLGMSFVWQGLAILVLPKPGGKAPDW
LLAIMSFKPPLIPFPIIAALLIGLVVHFGLMRTSYGVILRGSGGNPAALKRAGWSLLRTKIVLFALAGLFGVLSGMALIG
ITTSADANIGNGYTLLSIAGVILGGGEFVGGRVSPIGAVIGALTLALAASPLLTFMHIPPDWQVAANGAILIIVLAARVL
ISRRER
>Mature_325_residues
TAASLDTAARSSAERGALARARLLRGLLPALSLALVLAAIAWLNPRAISYFGFSLMLNLAIPIALATIAQMFVISGNELD
LSIGTFVGFVGCVTATWLKDAPLIGVAILLGSIGVYALLGALIHLRNLPSIVVTLGMSFVWQGLAILVLPKPGGKAPDWL
LAIMSFKPPLIPFPIIAALLIGLVVHFGLMRTSYGVILRGSGGNPAALKRAGWSLLRTKIVLFALAGLFGVLSGMALIGI
TTSADANIGNGYTLLSIAGVILGGGEFVGGRVSPIGAVIGALTLALAASPLLTFMHIPPDWQVAANGAILIIVLAARVLI
SRRER

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=279, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790191, Length=159, Percent_Identity=27.6729559748428, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693152, Length=276, Percent_Identity=27.1739130434783, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33736; Mature: 33605

Theoretical pI: Translated: 11.44; Mature: 11.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAASLDTAARSSAERGALARARLLRGLLPALSLALVLAAIAWLNPRAISYFGFSLMLNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AIPIALATIAQMFVISGNELDLSIGTFVGFVGCVTATWLKDAPLIGVAILLGSIGVYALL
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GALIHLRNLPSIVVTLGMSFVWQGLAILVLPKPGGKAPDWLLAIMSFKPPLIPFPIIAAL
HHHHHHHCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHH
LIGLVVHFGLMRTSYGVILRGSGGNPAALKRAGWSLLRTKIVLFALAGLFGVLSGMALIG
HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEE
ITTSADANIGNGYTLLSIAGVILGGGEFVGGRVSPIGAVIGALTLALAASPLLTFMHIPP
EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCC
DWQVAANGAILIIVLAARVLISRRER
CCEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAASLDTAARSSAERGALARARLLRGLLPALSLALVLAAIAWLNPRAISYFGFSLMLNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AIPIALATIAQMFVISGNELDLSIGTFVGFVGCVTATWLKDAPLIGVAILLGSIGVYALL
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GALIHLRNLPSIVVTLGMSFVWQGLAILVLPKPGGKAPDWLLAIMSFKPPLIPFPIIAAL
HHHHHHHCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHH
LIGLVVHFGLMRTSYGVILRGSGGNPAALKRAGWSLLRTKIVLFALAGLFGVLSGMALIG
HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEE
ITTSADANIGNGYTLLSIAGVILGGGEFVGGRVSPIGAVIGALTLALAASPLLTFMHIPP
EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCC
DWQVAANGAILIIVLAARVLISRRER
CCEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]