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The map label for this gene is rbsC [H]

Identifier: 13473558

GI number: 13473558

Start: 3353571

End: 3354518

Strand: Reverse

Name: rbsC [H]

Synonym: mll4201

Alternate gene names: 13473558

Gene position: 3354518-3353571 (Counterclockwise)

Preceding gene: 13473559

Following gene: 13473557

Centisome position: 47.68

GC content: 66.24

Gene sequence:

>948_bases
ATGTCATTGGTTAGATCGCTGGCCGGCAAACCCTGGGTATGGTCGTTCCTCGGCGCGCTTGTCGTGTGGCTGGCGACTAT
CGCCTTCACCGGCGGCTATGGCGCCGGCGGCATGGTCACGGCGGCGTTGTCGCTCGCCGTGTTCACCGTCATCGTCGGCG
TCGGCCAGATGTTCGTCATCACGCTCGGCCCCGGCAATGTCGACCTGTCGCTGCCGGCCAATATCGGCCTCGCCAGCGCG
GTCGCCATGAAGGTGATGGCCGGCAGCGATTCCATGATCGTGGTCGGCCTTCTGGCGGCGCTCGCCACGGGTGCCGCGAT
AGGCGCGGTCAACTATCTGCTGATCTGGGCGCTGCGCATTCCGCCGATCATCGCCACTTTGTCGGCGAGCTTCATCATCC
AGTCGATCGACATCAGCTATGGGCGCGGGCTGCAGATCAAGCCGCCGCCGGGCTTTGCCGATTTCACCAACTGGCAGGTG
CTGGGTATTCCCGTGCTGGCGGTGCTGACCGTGCTGTTCACCATCGGCGCGGCGATCGCCCTGCAGCGCATGATCTATGG
TCGCTCGGTGCTGGCGATCGGCCAGAACATCCGCGCCGCCTGGCTCGCCGGCGTCAATGTCGGGCGCATCCGCTTCCTCA
CCTACACGCTGTCTGGCGCGCTCGGCGGCATCGATGGCGCCCTGCTCGCCGGCTATTTCAGGGGCGCCAATGTCGACATC
GGCAATGAATATCTGCTCGCCTCGATCGCCGTCGTCGTCATCGGCGGCACGTCGGTCGCCGGCGGCAAGGCCAATGTGCC
CGGCGTGTGGGGAGCGGCGCTGTTTTTGGTGCTGCTGCTCACCATGCTCAACACGTTCGGCGTCAGCGCCGGCGTGCGGC
TGCTGCTGACGGGGCTGATCATCGTCGGGGTGATTACGGCGGCGGGCGGGGAGAAGGCGGTGCGGTGA

Upstream 100 bases:

>100_bases
CATGCACATCCCGCCGGACTGGCAGGTCGCCGCCAACGGCGCCATCCTGATCATCGTGCTGGCGGCGCGGGTGCTGATCA
GCCGCAGGGAGAGGTGAGCG

Downstream 100 bases:

>100_bases
TCGCCGTTCCCAAGCGTCCGGCGAGCATCGAGCGCGACCTCCCGGAGCAGCCCGTCGCGCCGCCAACTGTTGGGCCAGCC
CGACAGCGGGTTCCCATTCG

Product: ribose ABC transporter (permease)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSLVRSLAGKPWVWSFLGALVVWLATIAFTGGYGAGGMVTAALSLAVFTVIVGVGQMFVITLGPGNVDLSLPANIGLASA
VAMKVMAGSDSMIVVGLLAALATGAAIGAVNYLLIWALRIPPIIATLSASFIIQSIDISYGRGLQIKPPPGFADFTNWQV
LGIPVLAVLTVLFTIGAAIALQRMIYGRSVLAIGQNIRAAWLAGVNVGRIRFLTYTLSGALGGIDGALLAGYFRGANVDI
GNEYLLASIAVVVIGGTSVAGGKANVPGVWGAALFLVLLLTMLNTFGVSAGVRLLLTGLIIVGVITAAGGEKAVR

Sequences:

>Translated_315_residues
MSLVRSLAGKPWVWSFLGALVVWLATIAFTGGYGAGGMVTAALSLAVFTVIVGVGQMFVITLGPGNVDLSLPANIGLASA
VAMKVMAGSDSMIVVGLLAALATGAAIGAVNYLLIWALRIPPIIATLSASFIIQSIDISYGRGLQIKPPPGFADFTNWQV
LGIPVLAVLTVLFTIGAAIALQRMIYGRSVLAIGQNIRAAWLAGVNVGRIRFLTYTLSGALGGIDGALLAGYFRGANVDI
GNEYLLASIAVVVIGGTSVAGGKANVPGVWGAALFLVLLLTMLNTFGVSAGVRLLLTGLIIVGVITAAGGEKAVR
>Mature_314_residues
SLVRSLAGKPWVWSFLGALVVWLATIAFTGGYGAGGMVTAALSLAVFTVIVGVGQMFVITLGPGNVDLSLPANIGLASAV
AMKVMAGSDSMIVVGLLAALATGAAIGAVNYLLIWALRIPPIIATLSASFIIQSIDISYGRGLQIKPPPGFADFTNWQVL
GIPVLAVLTVLFTIGAAIALQRMIYGRSVLAIGQNIRAAWLAGVNVGRIRFLTYTLSGALGGIDGALLAGYFRGANVDIG
NEYLLASIAVVVIGGTSVAGGKANVPGVWGAALFLVLLLTMLNTFGVSAGVRLLLTGLIIVGVITAAGGEKAVR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=150, Percent_Identity=37.3333333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693152, Length=269, Percent_Identity=31.5985130111524, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790191, Length=191, Percent_Identity=31.413612565445, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787794, Length=157, Percent_Identity=31.2101910828025, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32093; Mature: 31962

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVRSLAGKPWVWSFLGALVVWLATIAFTGGYGAGGMVTAALSLAVFTVIVGVGQMFVI
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
TLGPGNVDLSLPANIGLASAVAMKVMAGSDSMIVVGLLAALATGAAIGAVNYLLIWALRI
EECCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PPIIATLSASFIIQSIDISYGRGLQIKPPPGFADFTNWQVLGIPVLAVLTVLFTIGAAIA
HHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
LQRMIYGRSVLAIGQNIRAAWLAGVNVGRIRFLTYTLSGALGGIDGALLAGYFRGANVDI
HHHHHHCCHHEECCCCHHHHHHHCCCCCCEEEEEEEHHCCCCCCCHHHHHHHHCCCCCCC
GNEYLLASIAVVVIGGTSVAGGKANVPGVWGAALFLVLLLTMLNTFGVSAGVRLLLTGLI
CCHHHHHHHEEHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
IVGVITAAGGEKAVR
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLVRSLAGKPWVWSFLGALVVWLATIAFTGGYGAGGMVTAALSLAVFTVIVGVGQMFVI
CHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
TLGPGNVDLSLPANIGLASAVAMKVMAGSDSMIVVGLLAALATGAAIGAVNYLLIWALRI
EECCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PPIIATLSASFIIQSIDISYGRGLQIKPPPGFADFTNWQVLGIPVLAVLTVLFTIGAAIA
HHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
LQRMIYGRSVLAIGQNIRAAWLAGVNVGRIRFLTYTLSGALGGIDGALLAGYFRGANVDI
HHHHHHCCHHEECCCCHHHHHHHCCCCCCEEEEEEEHHCCCCCCCHHHHHHHHCCCCCCC
GNEYLLASIAVVVIGGTSVAGGKANVPGVWGAALFLVLLLTMLNTFGVSAGVRLLLTGLI
CCHHHHHHHEEHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
IVGVITAAGGEKAVR
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]