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The map label for this gene is exbD [H]

Identifier: 13473529

GI number: 13473529

Start: 3324851

End: 3325318

Strand: Reverse

Name: exbD [H]

Synonym: mll4167

Alternate gene names: 13473529

Gene position: 3325318-3324851 (Counterclockwise)

Preceding gene: 13473530

Following gene: 13473528

Centisome position: 47.26

GC content: 67.31

Gene sequence:

>468_bases
ATGGGAGGCCGAATCCGCCAAAGCATGGACGACGACCTCGAGGAGAGCCACGAGATCAACGTCACGCCCTTCATCGACGT
CATCCTGGTGCTGCTGATCATCTTCATGGTGGCCGCACCGCTGGCGACGGTGGACGTCAATGTCGACCTGCCGGGCTCGA
CGGCGACACCCGCGCCGCAGCCGGAAACGCCGCTGTTCCTGACCTTGAAGGATGATCTTACGCTGGCGATCGGCAACGAT
ACCGTGCCGCGCCCGGCCGTCGCGGCTGTGCTGGACAGCAGGACCAGGGGCGACAAGCAGACGCGCATCTTCCTGCGCGC
CGACAAGGCGGTCGCCTATGGCGACCTGATGGAGGCGATGAACCTGCTGCGCGGCGCCGGCTATCTGAAGATCGCGCTGG
TCGGCCTGGAGACGGCGCCCGCGGCCGATGCACCGGCACCTGCTGCGGCGGGAACGGCCGCGCCATGA

Upstream 100 bases:

>100_bases
CTCGCCGATGCCTCGGCGGGCGTCGAGAGGCTGGTCAGCCGCGACCTGGATTTCCGCACGGTCGCGCCGGCAACGGCGCT
GGCGGCGGAGTAGCGACGCC

Downstream 100 bases:

>100_bases
CGCAGTCCGCCGCCCTGCCAACGACTTACCTGTCGCGCTTCGGCCGGCGAGATCTCGGCTTGTGGACAGGGGCGGCGGCG
CTGGTGCTCGGCGCCCATGT

Product: exbD, uptake of enterochelin; tonB-dependent uptake of B colicins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGGRIRQSMDDDLEESHEINVTPFIDVILVLLIIFMVAAPLATVDVNVDLPGSTATPAPQPETPLFLTLKDDLTLAIGND
TVPRPAVAAVLDSRTRGDKQTRIFLRADKAVAYGDLMEAMNLLRGAGYLKIALVGLETAPAADAPAPAAAGTAAP

Sequences:

>Translated_155_residues
MGGRIRQSMDDDLEESHEINVTPFIDVILVLLIIFMVAAPLATVDVNVDLPGSTATPAPQPETPLFLTLKDDLTLAIGND
TVPRPAVAAVLDSRTRGDKQTRIFLRADKAVAYGDLMEAMNLLRGAGYLKIALVGLETAPAADAPAPAAAGTAAP
>Mature_154_residues
GGRIRQSMDDDLEESHEINVTPFIDVILVLLIIFMVAAPLATVDVNVDLPGSTATPAPQPETPLFLTLKDDLTLAIGNDT
VPRPAVAAVLDSRTRGDKQTRIFLRADKAVAYGDLMEAMNLLRGAGYLKIALVGLETAPAADAPAPAAAGTAAP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=57.4468085106383, Blast_Score=156, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16245; Mature: 16114

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGRIRQSMDDDLEESHEINVTPFIDVILVLLIIFMVAAPLATVDVNVDLPGSTATPAPQ
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PETPLFLTLKDDLTLAIGNDTVPRPAVAAVLDSRTRGDKQTRIFLRADKAVAYGDLMEAM
CCCCEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHH
NLLRGAGYLKIALVGLETAPAADAPAPAAAGTAAP
HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GGRIRQSMDDDLEESHEINVTPFIDVILVLLIIFMVAAPLATVDVNVDLPGSTATPAPQ
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PETPLFLTLKDDLTLAIGNDTVPRPAVAAVLDSRTRGDKQTRIFLRADKAVAYGDLMEAM
CCCCEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHH
NLLRGAGYLKIALVGLETAPAADAPAPAAAGTAAP
HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]