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The map label for this gene is ycaN [H]

Identifier: 13472013

GI number: 13472013

Start: 1761193

End: 1762098

Strand: Reverse

Name: ycaN [H]

Synonym: mll2171

Alternate gene names: 13472013

Gene position: 1762098-1761193 (Counterclockwise)

Preceding gene: 13472019

Following gene: 13472012

Centisome position: 25.04

GC content: 71.41

Gene sequence:

>906_bases
ATGGCAGCGGATCTTGGCGACCTACAGGCGTTCGTGGCGGTGGCGCGCGCCGGCGGCTTTCGCGAAGCGGCACGGGTGGG
CAATGTCAGCGCCTCGAGCCTCTCGGAGACGGTACGGCGGCTGGAGACCGGGCTCGGCGTGCGGCTGCTCAACCGCACCA
CGCGCAGCGTCGCGCCCACCGAGGCCGGCGCCCGGCTGCTCGAGCGGCTCGGCCCGGCGCTCGACGAAGTCGAGGCGGCG
CTCGACGTGGTCAACGGCTTTCGTGGCCGCCCTGCCGGCACGCTGCGGCTCAACGTGCCGGTCGTCGCGGCGAAGCTGGT
GCTGCCGCGGCTGTTGCCGCCTTTCCTCGCCGCCTATCCCGACATTCGCGTGGAAGTGACCGCCGAGGACAGTTTCGTCG
ACATATTGGCGAGCGGCTGCGATGCCGGCATCCGCTATGAAGAGCGGCTGGAGCAGGACATGATCGCCGTCCCGATCGGC
CCGCGCCGGCAGCACTACGCCACGGCCGCCGCGCCGGCCTATCTCGACCGGCATGGCCGGCCCGAGCATCCGCGCGACCT
GCTGCATCACGCCTGCCTGCGCGGCCGCTTCGCCAGCGGCCTGACGCCGCCCTGGGAGTTCGAACGCGATGGCGAGGTGG
TGAGCGTCGAGCCGACCGGCCCGCTGCTGGTCAGCACCGGCACGGCGATGGCGCTTGCGCTCGAAGTGGCGGTCGCCGGC
GGCGGCATCGTCTCGCTGTTCGAGGACTGGCTGCGCCCCTATTTCGACGATGGCCGGCTGGAGCCGGTGCTCGAGCCCTG
GTGGCAGGAATTTTCCGGCCCGTTCCTCTACTATCCCGGCCGCCGCCTCACGCCGGCACCGCTCAGGGCGTTCATCGATT
TTGTCGGCACGATGCGCTGGGGGTGA

Upstream 100 bases:

>100_bases
CGGTCATGGTCTCATCTCCTTTGGATCGGCCCAATGTAGACAAAGCGCGCCTGCGCGATAATATGGCGCAATCGGCACAG
CCTGTACGGAAGGGCGAACA

Downstream 100 bases:

>100_bases
GGCTTCGAAGGGCAGCGGCGGGCTGGGTTAGGACGCCGCTTCTCGTCTTCGCGCAGGACGCGTGCGAACAGCGTTACGAT
GGCAAGGCGTTTTCGCATTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPTEAGARLLERLGPALDEVEAA
LDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYPDIRVEVTAEDSFVDILASGCDAGIRYEERLEQDMIAVPIG
PRRQHYATAAAPAYLDRHGRPEHPRDLLHHACLRGRFASGLTPPWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAVAG
GGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFVGTMRWG

Sequences:

>Translated_301_residues
MAADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPTEAGARLLERLGPALDEVEAA
LDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYPDIRVEVTAEDSFVDILASGCDAGIRYEERLEQDMIAVPIG
PRRQHYATAAAPAYLDRHGRPEHPRDLLHHACLRGRFASGLTPPWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAVAG
GGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFVGTMRWG
>Mature_300_residues
AADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPTEAGARLLERLGPALDEVEAAL
DVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYPDIRVEVTAEDSFVDILASGCDAGIRYEERLEQDMIAVPIGP
RRQHYATAAAPAYLDRHGRPEHPRDLLHHACLRGRFASGLTPPWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAVAGG
GIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFVGTMRWG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=43.7710437710438, Blast_Score=240, Evalue=7e-65,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=35.3951890034364, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1786401, Length=305, Percent_Identity=29.5081967213115, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=31.5254237288136, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=30.0341296928328, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=25.7731958762887, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=28.6195286195286, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786448, Length=255, Percent_Identity=28.6274509803922, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787601, Length=123, Percent_Identity=28.4552845528455, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=148, Percent_Identity=27.7027027027027, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789204, Length=133, Percent_Identity=32.3308270676692, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=140, Percent_Identity=30, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32788; Mature: 32657

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPT
CCCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
EAGARLLERLGPALDEVEAALDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYP
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCC
DIRVEVTAEDSFVDILASGCDAGIRYEERLEQDMIAVPIGPRRQHYATAAAPAYLDRHGR
CCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCC
PEHPRDLLHHACLRGRFASGLTPPWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAVAG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHCC
GGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFVGTMRW
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure 
AADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPT
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
EAGARLLERLGPALDEVEAALDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYP
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCC
DIRVEVTAEDSFVDILASGCDAGIRYEERLEQDMIAVPIGPRRQHYATAAAPAYLDRHGR
CCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCC
PEHPRDLLHHACLRGRFASGLTPPWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAVAG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHCC
GGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFVGTMRW
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]