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The map label for this gene is rbsC [H]

Identifier: 13471820

GI number: 13471820

Start: 1576911

End: 1577897

Strand: Reverse

Name: rbsC [H]

Synonym: mll1920

Alternate gene names: 13471820

Gene position: 1577897-1576911 (Counterclockwise)

Preceding gene: 13471821

Following gene: 13471819

Centisome position: 22.43

GC content: 65.35

Gene sequence:

>987_bases
ATGACCGACATCCAAAGCCCGGCGAAAGCTGCAGCCGCTCAGCCAGGCGGTCGCTCCGCGTTACAACATCTGCTGCAGGG
CGAGCGGCCCTACATGCTCTATGTCGCCTTCGCCGTCATGCTGATCGTCTTCAGCCTAGCGTCACCCTGGTTCCTGTCGA
TCGACAATTTTCTCAACATCGGCCGCCAGACGACACTGGTCTCGATCATCGCGGTGGGCATGACATTCGTCATCATCTCC
AGGCAGATCGACCTGTCCGTCGCCTCGACGCTGGCGCTTTCGGGCATGAGCGCATCGCTGGCCATGGCCTTTGTCGCCAA
CAACTGGGTCGTCGGTGCCGCGGCGGGGCTGGGCACCGGGGCGCTGATCGGGCTGCTCAACGGTGTCCTGACCACGCGCC
TCGAAATCCCGTCCTTCCTGGTGACGCTGGGCACGCTGAGCGGCGCGCGCGGCCTGGCGCTGATGGTCACCAACACCAAG
CCGGTCATCATCACCAACGAATATTATTTCGCGATCTTCGGCGAGGGCTCGGTGCTCGGTATACCGGCGCCGATCCTGTG
GACGCTCGGCGTCACCATCGCCGGCATCTTGCTGCTGCACTACAGCGTCTATGGGCGGCGGGTTTACGCCGCCGGCGGCA
ACCCGACGGCCGCGCTCTATTCCGGCGTCCACATCAAGCAGGTCACGACGCTTGCCTTCGTGCTGACCGGCACGCTCGCC
GGGCTGGCGTCGCTGATCCTGTCGGCGCGCTCGCACGCGGCGCGGCCCGATGTGGTGCAAGGCATGGAGCTCGACGTCAT
CGCCTCGGTCATCCTTGGCGGCTGCAGCCTGTTCGGCGGCCGCGGCTTCGTGCTCGGCACGCTGCTCGGCAGCCTGATCA
TCGGCACGCTCAACAACGGGCTGGTGCTGCTCGGCGTCAGCTCGTCGCTGCAACTCGTCATCAAGGGGGCAATCATCGTC
GCCGCGGTCGCGTTCACGAGGAGGTAA

Upstream 100 bases:

>100_bases
ATGGCCGGATCACCAGGACTGTCGCGCGGCCGGAATTCGGCAGCGCCGAGGACCTCCATCACCTCATTCAGATATCGCAG
CCATCGGAAGAGCACGCGGC

Downstream 100 bases:

>100_bases
GGCGCGCATCCACGGACATCAGCAGAAACCGCCGGCTCCAAACGGCAAAACAAACAATCAACGGAGGAAGTCATGAAACA
ATCGGCAAGAATCCTGTTCA

Product: permease protein of sugar ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MTDIQSPAKAAAAQPGGRSALQHLLQGERPYMLYVAFAVMLIVFSLASPWFLSIDNFLNIGRQTTLVSIIAVGMTFVIIS
RQIDLSVASTLALSGMSASLAMAFVANNWVVGAAAGLGTGALIGLLNGVLTTRLEIPSFLVTLGTLSGARGLALMVTNTK
PVIITNEYYFAIFGEGSVLGIPAPILWTLGVTIAGILLLHYSVYGRRVYAAGGNPTAALYSGVHIKQVTTLAFVLTGTLA
GLASLILSARSHAARPDVVQGMELDVIASVILGGCSLFGGRGFVLGTLLGSLIIGTLNNGLVLLGVSSSLQLVIKGAIIV
AAVAFTRR

Sequences:

>Translated_328_residues
MTDIQSPAKAAAAQPGGRSALQHLLQGERPYMLYVAFAVMLIVFSLASPWFLSIDNFLNIGRQTTLVSIIAVGMTFVIIS
RQIDLSVASTLALSGMSASLAMAFVANNWVVGAAAGLGTGALIGLLNGVLTTRLEIPSFLVTLGTLSGARGLALMVTNTK
PVIITNEYYFAIFGEGSVLGIPAPILWTLGVTIAGILLLHYSVYGRRVYAAGGNPTAALYSGVHIKQVTTLAFVLTGTLA
GLASLILSARSHAARPDVVQGMELDVIASVILGGCSLFGGRGFVLGTLLGSLIIGTLNNGLVLLGVSSSLQLVIKGAIIV
AAVAFTRR
>Mature_327_residues
TDIQSPAKAAAAQPGGRSALQHLLQGERPYMLYVAFAVMLIVFSLASPWFLSIDNFLNIGRQTTLVSIIAVGMTFVIISR
QIDLSVASTLALSGMSASLAMAFVANNWVVGAAAGLGTGALIGLLNGVLTTRLEIPSFLVTLGTLSGARGLALMVTNTKP
VIITNEYYFAIFGEGSVLGIPAPILWTLGVTIAGILLLHYSVYGRRVYAAGGNPTAALYSGVHIKQVTTLAFVLTGTLAG
LASLILSARSHAARPDVVQGMELDVIASVILGGCSLFGGRGFVLGTLLGSLIIGTLNNGLVLLGVSSSLQLVIKGAIIVA
AVAFTRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=41.6107382550336, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1788896, Length=294, Percent_Identity=40.1360544217687, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=37.3737373737374, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=36.7892976588629, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI87082395, Length=294, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789992, Length=129, Percent_Identity=38.7596899224806, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787794, Length=299, Percent_Identity=27.4247491638796, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787793, Length=293, Percent_Identity=31.0580204778157, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=30.2395209580838, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33914; Mature: 33782

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIQSPAKAAAAQPGGRSALQHLLQGERPYMLYVAFAVMLIVFSLASPWFLSIDNFLNI
CCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHC
GRQTTLVSIIAVGMTFVIISRQIDLSVASTLALSGMSASLAMAFVANNWVVGAAAGLGTG
CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCHH
ALIGLLNGVLTTRLEIPSFLVTLGTLSGARGLALMVTNTKPVIITNEYYFAIFGEGSVLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCEEEEEEECCCEEE
IPAPILWTLGVTIAGILLLHYSVYGRRVYAAGGNPTAALYSGVHIKQVTTLAFVLTGTLA
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
GLASLILSARSHAARPDVVQGMELDVIASVILGGCSLFGGRGFVLGTLLGSLIIGTLNNG
HHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
LVLLGVSSSLQLVIKGAIIVAAVAFTRR
EEEEEECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDIQSPAKAAAAQPGGRSALQHLLQGERPYMLYVAFAVMLIVFSLASPWFLSIDNFLNI
CCCCCCHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHC
GRQTTLVSIIAVGMTFVIISRQIDLSVASTLALSGMSASLAMAFVANNWVVGAAAGLGTG
CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCHH
ALIGLLNGVLTTRLEIPSFLVTLGTLSGARGLALMVTNTKPVIITNEYYFAIFGEGSVLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCEEEEEEECCCEEE
IPAPILWTLGVTIAGILLLHYSVYGRRVYAAGGNPTAALYSGVHIKQVTTLAFVLTGTLA
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
GLASLILSARSHAARPDVVQGMELDVIASVILGGCSLFGGRGFVLGTLLGSLIIGTLNNG
HHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
LVLLGVSSSLQLVIKGAIIVAAVAFTRR
EEEEEECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]