| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is 13471759
Identifier: 13471759
GI number: 13471759
Start: 1518860
End: 1520161
Strand: Reverse
Name: 13471759
Synonym: mll1835
Alternate gene names: NA
Gene position: 1520161-1518860 (Counterclockwise)
Preceding gene: 13471763
Following gene: 13471757
Centisome position: 21.61
GC content: 54.99
Gene sequence:
>1302_bases ATGACGACCGACGAACCTATCGGACTTCAATTCAGATCCCGCGAGGCGTTAACCGAAAGCATTGATAGCGACCCGTCCAG CTATGACGCCTGGGAAGAGTTGATCAATCTGGAGGCTTGGGAAGGCAATGTAGACACTGCCGTTTCTGCCCTTCTGCGAG CAGTTGATGCGGTGTCCGACAGGGACCGGCTTTGGCAAATGGTCGATGAATTTTCGTGGGTCTATGGAATTGGACGGGAG CCGATCATCGTTTTGTACGAGCGATGGAAAATTGATACGCATCAAAGCGCTTCAACAAGCATTTTCTTCGCGAAGCAATT TAAGGAGTTCGATCTTCTGGAGTTCAGCAACGAATGCATCTCGCGCGCGGAGCGCGAAGTGCACACTGCACAGGACTGCG TCTGGCTTGCGGAGTATATGCGCGAAAATGGGGAAGCACCGCGAGCCCTGGCCGTGTTGCAGCGTGGGATAGTCGCTCAC CCGCGCGACGCAACGATATGGGATTGCCTCGCCGACACACATCGCCTCGGGAAATCGGCGCGCGAACTGGCGGAAGCGAG CTATCAGTCGTTCAAGCAATGCCGCCTCGACGGAGTCACGGAAAAAGCCGATGTCGCCTGGGCATCCTTCGGCTGGATGC TCGATACGGTTGGCAACTATTTCTCGGCCGAGGAAGCCTATCGCCAGGCGATGGAAATTGATCCACGCTATAGCTGGCCC ATAGGGAAGTTGTCAGGATTGCTGCGTCGTCGTTTCGGCCGCTACCACGAGGCCGAAAGCCTTGCGCAACGATGCGTTGA GATCGATCCTGACGATGCCTGGTCGTGGTTCAATCTCGGTTTTCTTCATCATCATCATCTGAACCGCTTTGGCGATGCCA AGGCGGCGTATTCACGGGCAATCGAACTCAAGCCGGACTATGTCAAGGTTTGGGAGAATCTTGTGGCGCTGATGGCCTTC GAAACAGATACGCCAGCGGAGACTCAAGAGACTTTTGACAAGCTATTCGAGCTGAGCGGCATTTCGGCTTTTGCCTATAA TCAGTACGGCATCTTTCTCCGCGAAATGACGGACCGATATGATGAATCGGAGAAAGCTCTGCTGCATGCGATCGACATGG AGCCAGCCGAATGGTCCCACAGGTTGGCGTTGGCAGTCTTGTATGAAAAGCGCATGCTCAGATTCGGGGACGCTCGGAAA CGCCTGCTTGAAGCAAAGGAGCGCGGCGCTCCGGTCGACAACATAGACTACCGCCTGGCCTTGATTGCGCAGCGTCGGCG GCCCTTGAAAGTTATCAAGTAA
Upstream 100 bases:
>100_bases GCTGTGCGTTGCTCATATGGGTTGGCGATTGTAGATATACTGTCTAGTGTCCAGCTTTAGTCCGACATCGTTGTTTTCGG TAACACTTCAGCAGCAGCCA
Downstream 100 bases:
>100_bases GGAACGGTATGAAGCGTCTACTGTATTCGATCTTTGCCGCGCTTTTCGTGACATCAGCGCTTGCTCACGTTCCACCAACC GCCCCGGCTTACGCGAAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MTTDEPIGLQFRSREALTESIDSDPSSYDAWEELINLEAWEGNVDTAVSALLRAVDAVSDRDRLWQMVDEFSWVYGIGRE PIIVLYERWKIDTHQSASTSIFFAKQFKEFDLLEFSNECISRAEREVHTAQDCVWLAEYMRENGEAPRALAVLQRGIVAH PRDATIWDCLADTHRLGKSARELAEASYQSFKQCRLDGVTEKADVAWASFGWMLDTVGNYFSAEEAYRQAMEIDPRYSWP IGKLSGLLRRRFGRYHEAESLAQRCVEIDPDDAWSWFNLGFLHHHHLNRFGDAKAAYSRAIELKPDYVKVWENLVALMAF ETDTPAETQETFDKLFELSGISAFAYNQYGIFLREMTDRYDESEKALLHAIDMEPAEWSHRLALAVLYEKRMLRFGDARK RLLEAKERGAPVDNIDYRLALIAQRRRPLKVIK
Sequences:
>Translated_433_residues MTTDEPIGLQFRSREALTESIDSDPSSYDAWEELINLEAWEGNVDTAVSALLRAVDAVSDRDRLWQMVDEFSWVYGIGRE PIIVLYERWKIDTHQSASTSIFFAKQFKEFDLLEFSNECISRAEREVHTAQDCVWLAEYMRENGEAPRALAVLQRGIVAH PRDATIWDCLADTHRLGKSARELAEASYQSFKQCRLDGVTEKADVAWASFGWMLDTVGNYFSAEEAYRQAMEIDPRYSWP IGKLSGLLRRRFGRYHEAESLAQRCVEIDPDDAWSWFNLGFLHHHHLNRFGDAKAAYSRAIELKPDYVKVWENLVALMAF ETDTPAETQETFDKLFELSGISAFAYNQYGIFLREMTDRYDESEKALLHAIDMEPAEWSHRLALAVLYEKRMLRFGDARK RLLEAKERGAPVDNIDYRLALIAQRRRPLKVIK >Mature_432_residues TTDEPIGLQFRSREALTESIDSDPSSYDAWEELINLEAWEGNVDTAVSALLRAVDAVSDRDRLWQMVDEFSWVYGIGREP IIVLYERWKIDTHQSASTSIFFAKQFKEFDLLEFSNECISRAEREVHTAQDCVWLAEYMRENGEAPRALAVLQRGIVAHP RDATIWDCLADTHRLGKSARELAEASYQSFKQCRLDGVTEKADVAWASFGWMLDTVGNYFSAEEAYRQAMEIDPRYSWPI GKLSGLLRRRFGRYHEAESLAQRCVEIDPDDAWSWFNLGFLHHHHLNRFGDAKAAYSRAIELKPDYVKVWENLVALMAFE TDTPAETQETFDKLFELSGISAFAYNQYGIFLREMTDRYDESEKALLHAIDMEPAEWSHRLALAVLYEKRMLRFGDARKR LLEAKERGAPVDNIDYRLALIAQRRRPLKVIK
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50135; Mature: 50004
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTDEPIGLQFRSREALTESIDSDPSSYDAWEELINLEAWEGNVDTAVSALLRAVDAVSD CCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCH RDRLWQMVDEFSWVYGIGREPIIVLYERWKIDTHQSASTSIFFAKQFKEFDLLEFSNECI HHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SRAEREVHTAQDCVWLAEYMRENGEAPRALAVLQRGIVAHPRDATIWDCLADTHRLGKSA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH RELAEASYQSFKQCRLDGVTEKADVAWASFGWMLDTVGNYFSAEEAYRQAMEIDPRYSWP HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC IGKLSGLLRRRFGRYHEAESLAQRCVEIDPDDAWSWFNLGFLHHHHLNRFGDAKAAYSRA HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH IELKPDYVKVWENLVALMAFETDTPAETQETFDKLFELSGISAFAYNQYGIFLREMTDRY HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHH DESEKALLHAIDMEPAEWSHRLALAVLYEKRMLRFGDARKRLLEAKERGAPVDNIDYRLA CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LIAQRRRPLKVIK HHHHCCCCCCCCC >Mature Secondary Structure TTDEPIGLQFRSREALTESIDSDPSSYDAWEELINLEAWEGNVDTAVSALLRAVDAVSD CCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCH RDRLWQMVDEFSWVYGIGREPIIVLYERWKIDTHQSASTSIFFAKQFKEFDLLEFSNECI HHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SRAEREVHTAQDCVWLAEYMRENGEAPRALAVLQRGIVAHPRDATIWDCLADTHRLGKSA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH RELAEASYQSFKQCRLDGVTEKADVAWASFGWMLDTVGNYFSAEEAYRQAMEIDPRYSWP HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC IGKLSGLLRRRFGRYHEAESLAQRCVEIDPDDAWSWFNLGFLHHHHLNRFGDAKAAYSRA HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH IELKPDYVKVWENLVALMAFETDTPAETQETFDKLFELSGISAFAYNQYGIFLREMTDRY HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHH DESEKALLHAIDMEPAEWSHRLALAVLYEKRMLRFGDARKRLLEAKERGAPVDNIDYRLA CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LIAQRRRPLKVIK HHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA