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The map label for this gene is sgaR [H]

Identifier: 13471370

GI number: 13471370

Start: 1107798

End: 1108418

Strand: Direct

Name: sgaR [H]

Synonym: mlr1320

Alternate gene names: 13471370

Gene position: 1107798-1108418 (Clockwise)

Preceding gene: 13471367

Following gene: 13471371

Centisome position: 15.74

GC content: 61.03

Gene sequence:

>621_bases
ATGCGCATTGTCGTCGCCGAGCGCAATCCATTCGTCATATCGGCGCTGCGTGAAATGCTCGAATGCGACGGCCGTTTCGA
CTTGTTGGGCAGCGTGCAGAGCGGCAAGCAGTTCCTGGATCTCGCTGTCAAGGGCGGCTTCGACGTCGCAATCATCGGCT
GGAAGCTCGCCGACATGGACGGCGCGGATGTGCTGGCCGAGGTCCAGAGCCGCAAGCTCGACGTGCGCATCACCGTCTTT
TCCAACGACCATGACATCGGCATCCTGAAGCAATGCGTGCGGCTGGGAGCGCAGGGCTACTGTTTCCAGTTCGACGATCC
GGCCATCATCTTCGACACGATTCTGGCGGTCGCGCATGGCCGCATCTGCATCCCCTATATCGACATCAACAAGGTCAACG
ACACGCCGCTGGCGCAGCTCACGGTGCGTGAGCGCGAGTTGCTGGCGGTGCTTTCCGACGGCTGGACCAATCTGCAAATC
GCCACGCGCACCGGCATTTCCGAGAACACGGTGAAGTATCACCTCAAGAATCTCTACGACAAGCTCGACGTCCGCAACCG
GGCGATGGCCGTCGCGCTCTATGCGCGCGAGAGGCGTACCCAGAAGCAGCCTTTCGGGTAG

Upstream 100 bases:

>100_bases
TGAAGCCTGGCCTTTGAGTTGCCGCACAATCAGCCCAGGACAAAAACGGCCCTTGAACAGCAAGCCCGGGAAAACGAGCA
AGGCAATTGGCGACCGGCGC

Downstream 100 bases:

>100_bases
GCCAACCGGGTAGGCCGTCCCCACCCGCGCGCGGCGAGATCTTACCCGCCAAGGTGTTGTTGGCTTTAGCCGTCGAAACG
AAACTCCCCCCACCGCTTTG

Product: nitrate/nitrite regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRIVVAERNPFVISALREMLECDGRFDLLGSVQSGKQFLDLAVKGGFDVAIIGWKLADMDGADVLAEVQSRKLDVRITVF
SNDHDIGILKQCVRLGAQGYCFQFDDPAIIFDTILAVAHGRICIPYIDINKVNDTPLAQLTVRERELLAVLSDGWTNLQI
ATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARERRTQKQPFG

Sequences:

>Translated_206_residues
MRIVVAERNPFVISALREMLECDGRFDLLGSVQSGKQFLDLAVKGGFDVAIIGWKLADMDGADVLAEVQSRKLDVRITVF
SNDHDIGILKQCVRLGAQGYCFQFDDPAIIFDTILAVAHGRICIPYIDINKVNDTPLAQLTVRERELLAVLSDGWTNLQI
ATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARERRTQKQPFG
>Mature_206_residues
MRIVVAERNPFVISALREMLECDGRFDLLGSVQSGKQFLDLAVKGGFDVAIIGWKLADMDGADVLAEVQSRKLDVRITVF
SNDHDIGILKQCVRLGAQGYCFQFDDPAIIFDTILAVAHGRICIPYIDINKVNDTPLAQLTVRERELLAVLSDGWTNLQI
ATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARERRTQKQPFG

Specific function: Not known. Could act on the sgaA gene expression [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=27.4038461538462, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=24.6376811594203, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23127; Mature: 23127

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVVAERNPFVISALREMLECDGRFDLLGSVQSGKQFLDLAVKGGFDVAIIGWKLADMD
CEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHCCHHEEHHHCCCCCEEEEEEEEEECCC
GADVLAEVQSRKLDVRITVFSNDHDIGILKQCVRLGAQGYCFQFDDPAIIFDTILAVAHG
CHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC
RICIPYIDINKVNDTPLAQLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYD
CEEEEEEEEECCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
KLDVRNRAMAVALYARERRTQKQPFG
HHCCCCHHEEEEHHHHHHHCCCCCCC
>Mature Secondary Structure
MRIVVAERNPFVISALREMLECDGRFDLLGSVQSGKQFLDLAVKGGFDVAIIGWKLADMD
CEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHCCHHEEHHHCCCCCEEEEEEEEEECCC
GADVLAEVQSRKLDVRITVFSNDHDIGILKQCVRLGAQGYCFQFDDPAIIFDTILAVAHG
CHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC
RICIPYIDINKVNDTPLAQLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYD
CEEEEEEEEECCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
KLDVRNRAMAVALYARERRTQKQPFG
HHCCCCHHEEEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8898880; 9677290 [H]