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The map label for this gene is nodW [H]

Identifier: 13471106

GI number: 13471106

Start: 816337

End: 816975

Strand: Reverse

Name: nodW [H]

Synonym: mll0990

Alternate gene names: 13471106

Gene position: 816975-816337 (Counterclockwise)

Preceding gene: 13471107

Following gene: 13471105

Centisome position: 11.61

GC content: 59.62

Gene sequence:

>639_bases
ATGGGCGTGGCACAGTCAGAAACCGCGGAATGCCCCATGGCAATTCTGGTCGATGATGACGCAGAGGTGCGCGACGCCCT
CAAGGAATTGCTGAATTCCGTGGGCATCGAGTCGATTTCGTTCTCTTCGACCCAGGAGGTGCTGGACGCGGAGTTACCGG
ATCGCCCGGCCTGCTTTGTCCTCGATGTGCGCATGCCGGGCCAGAGCGGCCTGGATCTCCAGCATCTTCTCCTGACGAAG
GGAATACAGACTCCGGTCGTGTTCCTGACGGGCCATGGCGACATCGCCATGAGCGTGCAAGCGATGAAGACGGGAGCGGT
CGACTTCCTGACCAAACCGGTGCGCGACCAGACCTTCCTTGACGCGGTATCGGTAGCCGTCGCTACTGACAAAGCGCGCA
GGGCGGCCTCGACCGCGGCGCGCAAAACCATGGCGCTTTACGAGACCCTCACTCCACGGGAACGCGAGGTGCTGAGATTT
GTGGTCGCTGGGGCAATGAACAAGCAAATTGCATTCGACCTTGGCATCAGCGAAATCACCGTGAAGCTCCATCGGAGCAA
CATGATGAAGAAGATGAATGCAAGGTCCCTCACTCACCTCTTGGGGGCCTGGCAGTCGATGCCGGCTGAGATGCGTTGA

Upstream 100 bases:

>100_bases
CAAGCGCAGGTCACAGTTGACGTCTGGCGGCCGCGCGGCTGATAATACAGTGCGCGACAGCGGCAAATTTCGTGTCCAGC
AGATTCTCCCGAGGTGAGAT

Downstream 100 bases:

>100_bases
ACGCTGTTCGAATATGCGCTGCCGCTGTAGCGGGTTCGTTCGCATCCCACGCGATACGCCTCGGACAAATGGGCTGCAAC
GGACCGGGATCGCGAGACCC

Product: two component responce regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MGVAQSETAECPMAILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFVLDVRMPGQSGLDLQHLLLTK
GIQTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSVAVATDKARRAASTAARKTMALYETLTPREREVLRF
VVAGAMNKQIAFDLGISEITVKLHRSNMMKKMNARSLTHLLGAWQSMPAEMR

Sequences:

>Translated_212_residues
MGVAQSETAECPMAILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFVLDVRMPGQSGLDLQHLLLTK
GIQTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSVAVATDKARRAASTAARKTMALYETLTPREREVLRF
VVAGAMNKQIAFDLGISEITVKLHRSNMMKKMNARSLTHLLGAWQSMPAEMR
>Mature_211_residues
GVAQSETAECPMAILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFVLDVRMPGQSGLDLQHLLLTKG
IQTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSVAVATDKARRAASTAARKTMALYETLTPREREVLRFV
VAGAMNKQIAFDLGISEITVKLHRSNMMKKMNARSLTHLLGAWQSMPAEMR

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=184, Percent_Identity=34.7826086956522, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790299, Length=98, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788521, Length=147, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23118; Mature: 22987

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVAQSETAECPMAILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFV
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEE
LDVRMPGQSGLDLQHLLLTKGIQTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFL
EEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHCCCHHHHHCCCCCHHHH
DAVSVAVATDKARRAASTAARKTMALYETLTPREREVLRFVVAGAMNKQIAFDLGISEIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCHHHHH
VKLHRSNMMKKMNARSLTHLLGAWQSMPAEMR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GVAQSETAECPMAILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFV
CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEE
LDVRMPGQSGLDLQHLLLTKGIQTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFL
EEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHCCCHHHHHCCCCCHHHH
DAVSVAVATDKARRAASTAARKTMALYETLTPREREVLRFVVAGAMNKQIAFDLGISEIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCHHHHH
VKLHRSNMMKKMNARSLTHLLGAWQSMPAEMR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]