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The map label for this gene is yhdW [H]

Identifier: 13470851

GI number: 13470851

Start: 516801

End: 517529

Strand: Direct

Name: yhdW [H]

Synonym: mlr0660

Alternate gene names: 13470851

Gene position: 516801-517529 (Clockwise)

Preceding gene: 13470850

Following gene: 13470852

Centisome position: 7.35

GC content: 60.63

Gene sequence:

>729_bases
ATGACCGACCTATCCTGGCTGACTGCCCGGCCCGTTGCCCATCGCGGCTTCCACGACATGAACAAGACGCGCTGGGAAAA
CACGCTTTCCGCCTTCACTGCCGCGGCCGAACGGGACTACGCCATCGAATGCGACGTGCATCTGTCGTCCGACGGCGTTC
CCATCATCATCCATGATGACGACCTGAAAAGACTGACCGGACAGGACGGTTTCGTCTGGCAGCGCAGCGCGGCCGAACTG
ACCGCGCTCAAGGTTGGCGGCACATCCGACCGCGTGCCGACGCTGCAGGAAGCGCTCGACCTCGTCGACGGCCGCGTGCC
CATGGTCGTCGAACTGAAAGGCATTCCCGGCCGCGATGAAGGCCTGGTCGCCCGCGTCGGCAACATGCTCAAGCGCTACA
AGGGCAAGGCGGCTATCATGTCGTTCGATCATTGGCTTATCCGCGAATTCCCGAAACATGCACCCGGCATTCCCGCTGGC
CTGACCGCCTACGGCAAGGACCTCAAGCTGATCGAGGCGCATTTTTCCATGCTGGCGCACGAGCTATCCTTCACCTCCTA
CGCTGCGGGCGACTTGCCAAACCCGTTCGTCAGCTTCGTGCGTGAAAAGCTCAAAATGCCTGTCATCACCTGGACGGTGC
ATGATCAGCCCGCGATCGACCTGACCTTCAAATATGCCGACCAGATGACGTTCGAAGGGTTCGAACCCGAACTGGTCAAA
GTCGCTTGA

Upstream 100 bases:

>100_bases
GGCAAACACGCTCGCTCCGCCGTCGGCACCACCTCTCTGCCGCTTAATGCCGCGGTGGAAATCGAAGCCATCTTCGAAGT
CGAATGAACGAAGGCCTGAC

Downstream 100 bases:

>100_bases
GCGGAGTGTCTGAAACGTGACTTGTAGCGGCCTGGATGGAGCTTAAATAAGCCTCATGGATCAGGGCGACGATGGCGACG
GGCAAACTGCAAATGCGGAC

Product: phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTDLSWLTARPVAHRGFHDMNKTRWENTLSAFTAAAERDYAIECDVHLSSDGVPIIIHDDDLKRLTGQDGFVWQRSAAEL
TALKVGGTSDRVPTLQEALDLVDGRVPMVVELKGIPGRDEGLVARVGNMLKRYKGKAAIMSFDHWLIREFPKHAPGIPAG
LTAYGKDLKLIEAHFSMLAHELSFTSYAAGDLPNPFVSFVREKLKMPVITWTVHDQPAIDLTFKYADQMTFEGFEPELVK
VA

Sequences:

>Translated_242_residues
MTDLSWLTARPVAHRGFHDMNKTRWENTLSAFTAAAERDYAIECDVHLSSDGVPIIIHDDDLKRLTGQDGFVWQRSAAEL
TALKVGGTSDRVPTLQEALDLVDGRVPMVVELKGIPGRDEGLVARVGNMLKRYKGKAAIMSFDHWLIREFPKHAPGIPAG
LTAYGKDLKLIEAHFSMLAHELSFTSYAAGDLPNPFVSFVREKLKMPVITWTVHDQPAIDLTFKYADQMTFEGFEPELVK
VA
>Mature_241_residues
TDLSWLTARPVAHRGFHDMNKTRWENTLSAFTAAAERDYAIECDVHLSSDGVPIIIHDDDLKRLTGQDGFVWQRSAAELT
ALKVGGTSDRVPTLQEALDLVDGRVPMVVELKGIPGRDEGLVARVGNMLKRYKGKAAIMSFDHWLIREFPKHAPGIPAGL
TAYGKDLKLIEAHFSMLAHELSFTSYAAGDLPNPFVSFVREKLKMPVITWTVHDQPAIDLTFKYADQMTFEGFEPELVKV
A

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26992; Mature: 26861

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLSWLTARPVAHRGFHDMNKTRWENTLSAFTAAAERDYAIECDVHLSSDGVPIIIHDD
CCCCCCHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECC
DLKRLTGQDGFVWQRSAAELTALKVGGTSDRVPTLQEALDLVDGRVPMVVELKGIPGRDE
HHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC
GLVARVGNMLKRYKGKAAIMSFDHWLIREFPKHAPGIPAGLTAYGKDLKLIEAHFSMLAH
HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHH
ELSFTSYAAGDLPNPFVSFVREKLKMPVITWTVHDQPAIDLTFKYADQMTFEGFEPELVK
HHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCEECCCCCCCEEE
VA
EC
>Mature Secondary Structure 
TDLSWLTARPVAHRGFHDMNKTRWENTLSAFTAAAERDYAIECDVHLSSDGVPIIIHDD
CCCCCHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECC
DLKRLTGQDGFVWQRSAAELTALKVGGTSDRVPTLQEALDLVDGRVPMVVELKGIPGRDE
HHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC
GLVARVGNMLKRYKGKAAIMSFDHWLIREFPKHAPGIPAGLTAYGKDLKLIEAHFSMLAH
HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHH
ELSFTSYAAGDLPNPFVSFVREKLKMPVITWTVHDQPAIDLTFKYADQMTFEGFEPELVK
HHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCEECCCCCCCEEE
VA
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]