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The map label for this gene is csiR [H]

Identifier: 13470825

GI number: 13470825

Start: 490823

End: 491602

Strand: Direct

Name: csiR [H]

Synonym: mlr0625

Alternate gene names: 13470825

Gene position: 490823-491602 (Clockwise)

Preceding gene: 13470820

Following gene: 13470826

Centisome position: 6.98

GC content: 65.26

Gene sequence:

>780_bases
ATGGCGATGCAGGATCAGAACAATTCCACGAAGACCGAGGCGGCCTATCAGCTGCTGCGGCGCGATATCCTGACCACCCG
CCTCATGCCGGGCGCGCCGCTCAAGCTGAGCGCGCTGCGCGGCACATACGGCGTCGGCTGGACGCCGCTGCGTGAAGCCT
TGTCCCGACTTGAAGCCGAACGCCTGGTCACCGCCATCAGCAATCGCGGCTTTGCCGTCGCTCCCGTGTCGCGCGCCGAG
CTCGAGGACCTGGCGCGCGCAAGGATGGTTGTCGAAATGCCGCTGTTCCTGGAATCGATCGCGAACGGCGGCAGGGAATG
GGAGGACGCGGTCGTCACCGCTCATTACCGGCTCTCCCGCTGCAAGACCGCGGTCGAAGACCCTTCCGATGCGGCCGTCG
ACAAATGGGACGAGAGCCACGAGGCCTTCCATGCGGCGTTGCTGAGCGCGGCGACGTCGAACTGGCTGTTGCGCTTCCGC
TCGACGATCGCCGATCAGCTGCGGCGGCATCACCGTTTTCTCGGCCTGGCGCCCACATTACGAGCGGCGGCCGGCCTCAA
GGACGGCTATGGCGAGGCAATGGACGCTTTGCGCGAGGCGATCGCCATCGAGCATCACACCGAGATCATGGAAGCGGCGC
TCGATCGCGACGTCGAGCGGGCAAAGGCGCTGATGACGGCGCATATCGGCTACACGCTGCACGTCTATGTGCACAGCGAA
GACAATTGCGCCAATCCCTACACCGCGCGCGCCGGCAGTCTGAAAGCGGTTTCCGGATGA

Upstream 100 bases:

>100_bases
GACGATCATGGTCAGTCCCTCGCCACGTGTCAAACATTATATATAATTCTTGCCATATCTCCCCATCATATATAATTTTC
CAGAGCCCGATGATGGACGG

Downstream 100 bases:

>100_bases
CGCGGCCGCGGCGTCCAGATCCACGCGGCCGTGCCGGCCCTGAACCCGCGATCGTTGGCGTTTTGATTTCGTTTCGTTCC
ACTGGAAATGGATCGATACA

Product: hypothetical protein

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAMQDQNNSTKTEAAYQLLRRDILTTRLMPGAPLKLSALRGTYGVGWTPLREALSRLEAERLVTAISNRGFAVAPVSRAE
LEDLARARMVVEMPLFLESIANGGREWEDAVVTAHYRLSRCKTAVEDPSDAAVDKWDESHEAFHAALLSAATSNWLLRFR
STIADQLRRHHRFLGLAPTLRAAAGLKDGYGEAMDALREAIAIEHHTEIMEAALDRDVERAKALMTAHIGYTLHVYVHSE
DNCANPYTARAGSLKAVSG

Sequences:

>Translated_259_residues
MAMQDQNNSTKTEAAYQLLRRDILTTRLMPGAPLKLSALRGTYGVGWTPLREALSRLEAERLVTAISNRGFAVAPVSRAE
LEDLARARMVVEMPLFLESIANGGREWEDAVVTAHYRLSRCKTAVEDPSDAAVDKWDESHEAFHAALLSAATSNWLLRFR
STIADQLRRHHRFLGLAPTLRAAAGLKDGYGEAMDALREAIAIEHHTEIMEAALDRDVERAKALMTAHIGYTLHVYVHSE
DNCANPYTARAGSLKAVSG
>Mature_258_residues
AMQDQNNSTKTEAAYQLLRRDILTTRLMPGAPLKLSALRGTYGVGWTPLREALSRLEAERLVTAISNRGFAVAPVSRAEL
EDLARARMVVEMPLFLESIANGGREWEDAVVTAHYRLSRCKTAVEDPSDAAVDKWDESHEAFHAALLSAATSNWLLRFRS
TIADQLRRHHRFLGLAPTLRAAAGLKDGYGEAMDALREAIAIEHHTEIMEAALDRDVERAKALMTAHIGYTLHVYVHSED
NCANPYTARAGSLKAVSG

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=215, Percent_Identity=35.8139534883721, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28592; Mature: 28461

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMQDQNNSTKTEAAYQLLRRDILTTRLMPGAPLKLSALRGTYGVGWTPLREALSRLEAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
RLVTAISNRGFAVAPVSRAELEDLARARMVVEMPLFLESIANGGREWEDAVVTAHYRLSR
HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
CKTAVEDPSDAAVDKWDESHEAFHAALLSAATSNWLLRFRSTIADQLRRHHRFLGLAPTL
HHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RAAAGLKDGYGEAMDALREAIAIEHHTEIMEAALDRDVERAKALMTAHIGYTLHVYVHSE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
DNCANPYTARAGSLKAVSG
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AMQDQNNSTKTEAAYQLLRRDILTTRLMPGAPLKLSALRGTYGVGWTPLREALSRLEAE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
RLVTAISNRGFAVAPVSRAELEDLARARMVVEMPLFLESIANGGREWEDAVVTAHYRLSR
HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
CKTAVEDPSDAAVDKWDESHEAFHAALLSAATSNWLLRFRSTIADQLRRHHRFLGLAPTL
HHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RAAAGLKDGYGEAMDALREAIAIEHHTEIMEAALDRDVERAKALMTAHIGYTLHVYVHSE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
DNCANPYTARAGSLKAVSG
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]