Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
---|---|
Accession | NC_002678 |
Length | 7,036,071 |
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The map label for this gene is yddA [H]
Identifier: 13470735
GI number: 13470735
Start: 383247
End: 385232
Strand: Direct
Name: yddA [H]
Synonym: mlr0519
Alternate gene names: 13470735
Gene position: 383247-385232 (Clockwise)
Preceding gene: 13470733
Following gene: 13470736
Centisome position: 5.45
GC content: 60.98
Gene sequence:
>1986_bases GTGATTCGGATCGGCAGACGATCGCAGGAGTCAGTACCGGATAGACTACACCGCGGCCCCGCAGGGCGGTCGCATTTGAC GCCGGTATCCTCGATGCGCAGTTTCTGGGGGCTGATGAAGGCCTACTGGTTCTCCGAGCGCTGGAAGGAAGCCTGGACGC TCACTGTCGTCATCGCCCTGCTGACGGCGCTTTCCAGCAAGGCCGGCGTCTGGTTTGCCTTGGCATTGGGCGAGTTGGGC AATTCGATCGCCTTCTTCCACGATGCGGCCAACACCAGCCCGCTGCAGGCAATTCTGACCAATGCCGGCATACTTGTGCT GCTGGTCGTGCTCAAGGATGCCGGCTTCACCGGCGTGCGCGGTCTTGTCTCGGCAACCCTGCACCGAAAGTGGCGCGGCT GGCTGAATAGCCAGTTCAACAAGGCTCTGCTCGACGGCAATCATACCCACTTCCATGCTCAGCATGGTTCGGCGGCTGGC GGTATCGTCGCACCCGACAACATCGACCAGCGCATCCAGGAATCGATCAAGGACATGACGGGCGGGGCGATCGGTCTCGC CATGGGCGTTCTGGGTGTTGCGACCTCGCTCTATTTTATCGGCGAAAATCTGATCGGATCCTCGGTAGAGGTCAAAGGAC TGGAGTTCCTCGGCGGTTATGGCAGCGCAGTGCTGGCCTTCCTCGCCGTCGCCATTTACGTGCCGTTGAACACTTGGATT GCGGTCAAGCTTGGCCGCTTGCTCGAGCGGCTCAATATCCGCATGCAGCAGGCCGAGGGCAGCTACCGCAGTGAACTGAC GACGTTCCTGCGCCGCAGCTTCCATGTCGCCGCCTCGCATGGCGAAGATGTGCAAAAGTCGATGCACGACAAGCTCTATG TCGATATCGACAAGACCTGGGGCAAGCTCAATGTCGTCAACAATGGCTACACGTCGTTCGAGCTGATCTACAACTTCCTC GGCGCCCGGATCGTCGCCTATGGTCCCGGTCTGGTGTCGTTCATACACAATCGCTTGGACTACAAGGGCTACATAACCGG CTCCGAAATGGTCGCCCAGTTGATCAGCCAGTGCTCGTGGTTCATCCATGTCATGCCCGCCATCGCCACGCTGCGCGCCA ACAGCCAGCGTGTCACGGAACTGGCGAACGCGATCGAGAACGTCCAGCATCCGCAGGCGTTCTACAGCCAGACCGGTCAG TCCGACTTCCACTATGCCAGCCAGAACCCTGTTTTCGGCCTGACCATCCAGAAGCTCGAACTGGCACATCAGGGCGAGGA CGCGACACCGTTCCTCAGTGCCGCCAATTTGCGCTTCCGGCGCGGCGAGTGGACGTTCCTCAAAGGCGAATCCGGTTGCG GCAAGACTTCGCTGATCAAGGCGATCAACGGCCTCTGGCCTTATGGCCGCGGCACCATTGTCTTCCCCGACGGGGTGAAG AGTTTTTACGCCGCCCAGGAGGTCAAGCTCCAGCAGGTGTCGCTGAAACAGCTGGTCTGCCTGCCGGGCTCCGAGCACGA CCATGGCGATGCCCAGGTCGCGTCGGCGCTGCACAAGGCGGGCCTTGGCGACTTCATCGAGCATATGGCCAATGAAAGCC GTGAAGGCAAAAGCTGGGATCAGGTCTTGTCGGGCGGCCAGAAGCAGAAGCTGGTGGTGGCCCGCATCATCCTGCAGCAG CCGGGGCTGCTGTTCCTCGACGAGGCGACCGGCGCCCTCGACCCGGAGGGCAAGATTGCCTTCCACCAGGCGATCAAGGA CAACTGCCCCGATGTCACCGTGATCAGCGTCATGCACGAAGCAGTGGCGCCACGATCGGCTGCCGGCACCGAGTTCTACC ACTCGATCGTGTTGATCGCCGACGGCGTCGCCACCAAGAAGCCGCTGACTCCGACCCTGCCAGTCGAACTCACCACGATT CTGACCCAGCCACGGCCGGTCGAGGATAAATGGCTGCGTTTCTCGCGCCGGCTGAAGCAGAAATAA
Upstream 100 bases:
>100_bases CCCGGATCTTCAAATCTCGCCGAACCTCTACAAAAATTAATGGAAAATGATCAATTGGTGTTACCATCCGTAACAAAACA AAAAAGGTTTGGGCGGGATC
Downstream 100 bases:
>100_bases CGTTGATTTCACCACGACTTGCCGGGCAGCACGGCGGTCGGCGGTCACAGTATCGCGATCGGAGCCATCGGGCGCCGTTT TCCTCACTCACCGCGATTGA
Product: ATP-binding protein of ABC-transporter
Products: NA
Alternate protein names: CDS102 [H]
Number of amino acids: Translated: 661; Mature: 661
Protein sequence:
>661_residues MIRIGRRSQESVPDRLHRGPAGRSHLTPVSSMRSFWGLMKAYWFSERWKEAWTLTVVIALLTALSSKAGVWFALALGELG NSIAFFHDAANTSPLQAILTNAGILVLLVVLKDAGFTGVRGLVSATLHRKWRGWLNSQFNKALLDGNHTHFHAQHGSAAG GIVAPDNIDQRIQESIKDMTGGAIGLAMGVLGVATSLYFIGENLIGSSVEVKGLEFLGGYGSAVLAFLAVAIYVPLNTWI AVKLGRLLERLNIRMQQAEGSYRSELTTFLRRSFHVAASHGEDVQKSMHDKLYVDIDKTWGKLNVVNNGYTSFELIYNFL GARIVAYGPGLVSFIHNRLDYKGYITGSEMVAQLISQCSWFIHVMPAIATLRANSQRVTELANAIENVQHPQAFYSQTGQ SDFHYASQNPVFGLTIQKLELAHQGEDATPFLSAANLRFRRGEWTFLKGESGCGKTSLIKAINGLWPYGRGTIVFPDGVK SFYAAQEVKLQQVSLKQLVCLPGSEHDHGDAQVASALHKAGLGDFIEHMANESREGKSWDQVLSGGQKQKLVVARIILQQ PGLLFLDEATGALDPEGKIAFHQAIKDNCPDVTVISVMHEAVAPRSAAGTEFYHSIVLIADGVATKKPLTPTLPVELTTI LTQPRPVEDKWLRFSRRLKQK
Sequences:
>Translated_661_residues MIRIGRRSQESVPDRLHRGPAGRSHLTPVSSMRSFWGLMKAYWFSERWKEAWTLTVVIALLTALSSKAGVWFALALGELG NSIAFFHDAANTSPLQAILTNAGILVLLVVLKDAGFTGVRGLVSATLHRKWRGWLNSQFNKALLDGNHTHFHAQHGSAAG GIVAPDNIDQRIQESIKDMTGGAIGLAMGVLGVATSLYFIGENLIGSSVEVKGLEFLGGYGSAVLAFLAVAIYVPLNTWI AVKLGRLLERLNIRMQQAEGSYRSELTTFLRRSFHVAASHGEDVQKSMHDKLYVDIDKTWGKLNVVNNGYTSFELIYNFL GARIVAYGPGLVSFIHNRLDYKGYITGSEMVAQLISQCSWFIHVMPAIATLRANSQRVTELANAIENVQHPQAFYSQTGQ SDFHYASQNPVFGLTIQKLELAHQGEDATPFLSAANLRFRRGEWTFLKGESGCGKTSLIKAINGLWPYGRGTIVFPDGVK SFYAAQEVKLQQVSLKQLVCLPGSEHDHGDAQVASALHKAGLGDFIEHMANESREGKSWDQVLSGGQKQKLVVARIILQQ PGLLFLDEATGALDPEGKIAFHQAIKDNCPDVTVISVMHEAVAPRSAAGTEFYHSIVLIADGVATKKPLTPTLPVELTTI LTQPRPVEDKWLRFSRRLKQK >Mature_661_residues MIRIGRRSQESVPDRLHRGPAGRSHLTPVSSMRSFWGLMKAYWFSERWKEAWTLTVVIALLTALSSKAGVWFALALGELG NSIAFFHDAANTSPLQAILTNAGILVLLVVLKDAGFTGVRGLVSATLHRKWRGWLNSQFNKALLDGNHTHFHAQHGSAAG GIVAPDNIDQRIQESIKDMTGGAIGLAMGVLGVATSLYFIGENLIGSSVEVKGLEFLGGYGSAVLAFLAVAIYVPLNTWI AVKLGRLLERLNIRMQQAEGSYRSELTTFLRRSFHVAASHGEDVQKSMHDKLYVDIDKTWGKLNVVNNGYTSFELIYNFL GARIVAYGPGLVSFIHNRLDYKGYITGSEMVAQLISQCSWFIHVMPAIATLRANSQRVTELANAIENVQHPQAFYSQTGQ SDFHYASQNPVFGLTIQKLELAHQGEDATPFLSAANLRFRRGEWTFLKGESGCGKTSLIKAINGLWPYGRGTIVFPDGVK SFYAAQEVKLQQVSLKQLVCLPGSEHDHGDAQVASALHKAGLGDFIEHMANESREGKSWDQVLSGGQKQKLVVARIILQQ PGLLFLDEATGALDPEGKIAFHQAIKDNCPDVTVISVMHEAVAPRSAAGTEFYHSIVLIADGVATKKPLTPTLPVELTTI LTQPRPVEDKWLRFSRRLKQK
Specific function: Unknown
COG id: COG4178
COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9945308, Length=179, Percent_Identity=33.5195530726257, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI4506341, Length=398, Percent_Identity=23.1155778894472, Blast_Score=83, Evalue=9e-16, Organism=Homo sapiens, GI7262393, Length=175, Percent_Identity=33.1428571428571, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI9961252, Length=184, Percent_Identity=29.3478260869565, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI4505771, Length=184, Percent_Identity=29.3478260869565, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI9961250, Length=191, Percent_Identity=31.413612565445, Blast_Score=77, Evalue=8e-14, Organism=Homo sapiens, GI42741659, Length=184, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI255708477, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=5e-13, Organism=Homo sapiens, GI148612844, Length=195, Percent_Identity=29.7435897435897, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI4826958, Length=200, Percent_Identity=29.5, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI9955968, Length=221, Percent_Identity=27.6018099547511, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI9955966, Length=221, Percent_Identity=27.6018099547511, Blast_Score=67, Evalue=7e-11, Organism=Homo sapiens, GI45243524, Length=221, Percent_Identity=27.6018099547511, Blast_Score=67, Evalue=7e-11, Organism=Escherichia coli, GI1787772, Length=489, Percent_Identity=25.1533742331288, Blast_Score=151, Evalue=1e-37, Organism=Escherichia coli, GI1787143, Length=225, Percent_Identity=27.1111111111111, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787112, Length=263, Percent_Identity=24.7148288973384, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564250, Length=477, Percent_Identity=23.4800838574423, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17558664, Length=199, Percent_Identity=29.1457286432161, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000520, Length=468, Percent_Identity=22.8632478632479, Blast_Score=82, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17533971, Length=401, Percent_Identity=24.6882793017456, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17542146, Length=170, Percent_Identity=32.3529411764706, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17541710, Length=208, Percent_Identity=29.8076923076923, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17532409, Length=191, Percent_Identity=28.2722513089005, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI72000518, Length=165, Percent_Identity=29.0909090909091, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17532411, Length=197, Percent_Identity=27.4111675126904, Blast_Score=76, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17543740, Length=224, Percent_Identity=26.7857142857143, Blast_Score=75, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567265, Length=247, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17565938, Length=222, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI193202349, Length=189, Percent_Identity=30.1587301587302, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992290, Length=211, Percent_Identity=26.5402843601896, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI25146777, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567269, Length=249, Percent_Identity=25.7028112449799, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24643394, Length=422, Percent_Identity=23.4597156398104, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI17136662, Length=349, Percent_Identity=24.6418338108883, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI85726357, Length=195, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=5e-14, Organism=Drosophila melanogaster, GI24638558, Length=185, Percent_Identity=26.4864864864865, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24638550, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24638552, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24638554, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24638546, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24638556, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24638548, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24659289, Length=253, Percent_Identity=23.7154150197628, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI281363262, Length=231, Percent_Identity=26.4069264069264, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653245, Length=231, Percent_Identity=26.4069264069264, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010509 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017940 - InterPro: IPR011527 - InterPro: IPR003593 [H]
Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 72577; Mature: 72577
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRIGRRSQESVPDRLHRGPAGRSHLTPVSSMRSFWGLMKAYWFSERWKEAWTLTVVIAL CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTALSSKAGVWFALALGELGNSIAFFHDAANTSPLQAILTNAGILVLLVVLKDAGFTGVR HHHHCCCCCCEEEEEHHHHCCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHH GLVSATLHRKWRGWLNSQFNKALLDGNHTHFHAQHGSAAGGIVAPDNIDQRIQESIKDMT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC GGAIGLAMGVLGVATSLYFIGENLIGSSVEVKGLEFLGGYGSAVLAFLAVAIYVPLNTWI CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHH AVKLGRLLERLNIRMQQAEGSYRSELTTFLRRSFHVAASHGEDVQKSMHDKLYVDIDKTW HHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCC GKLNVVNNGYTSFELIYNFLGARIVAYGPGLVSFIHNRLDYKGYITGSEMVAQLISQCSW CEEEEECCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH FIHVMPAIATLRANSQRVTELANAIENVQHPQAFYSQTGQSDFHYASQNPVFGLTIQKLE HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEECCCCCEEEEEHHHHH LAHQGEDATPFLSAANLRFRRGEWTFLKGESGCGKTSLIKAINGLWPYGRGTIVFPDGVK HHHCCCCCCCHHHHCCCEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCHH SFYAAQEVKLQQVSLKQLVCLPGSEHDHGDAQVASALHKAGLGDFIEHMANESREGKSWD HHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH QVLSGGQKQKLVVARIILQQPGLLFLDEATGALDPEGKIAFHQAIKDNCPDVTVISVMHE HHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH AVAPRSAAGTEFYHSIVLIADGVATKKPLTPTLPVELTTILTQPRPVEDKWLRFSRRLKQ HHCCCCCCCHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCC K C >Mature Secondary Structure MIRIGRRSQESVPDRLHRGPAGRSHLTPVSSMRSFWGLMKAYWFSERWKEAWTLTVVIAL CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTALSSKAGVWFALALGELGNSIAFFHDAANTSPLQAILTNAGILVLLVVLKDAGFTGVR HHHHCCCCCCEEEEEHHHHCCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHH GLVSATLHRKWRGWLNSQFNKALLDGNHTHFHAQHGSAAGGIVAPDNIDQRIQESIKDMT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC GGAIGLAMGVLGVATSLYFIGENLIGSSVEVKGLEFLGGYGSAVLAFLAVAIYVPLNTWI CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHH AVKLGRLLERLNIRMQQAEGSYRSELTTFLRRSFHVAASHGEDVQKSMHDKLYVDIDKTW HHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCC GKLNVVNNGYTSFELIYNFLGARIVAYGPGLVSFIHNRLDYKGYITGSEMVAQLISQCSW CEEEEECCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH FIHVMPAIATLRANSQRVTELANAIENVQHPQAFYSQTGQSDFHYASQNPVFGLTIQKLE HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEECCCCCEEEEEHHHHH LAHQGEDATPFLSAANLRFRRGEWTFLKGESGCGKTSLIKAINGLWPYGRGTIVFPDGVK HHHCCCCCCCHHHHCCCEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCHH SFYAAQEVKLQQVSLKQLVCLPGSEHDHGDAQVASALHKAGLGDFIEHMANESREGKSWD HHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH QVLSGGQKQKLVVARIILQQPGLLFLDEATGALDPEGKIAFHQAIKDNCPDVTVISVMHE HHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH AVAPRSAAGTEFYHSIVLIADGVATKKPLTPTLPVELTTILTQPRPVEDKWLRFSRRLKQ HHCCCCCCCHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]