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The map label for this gene is arcD [H]

Identifier: 15602027

GI number: 15602027

Start: 188466

End: 189878

Strand: Reverse

Name: arcD [H]

Synonym: PM0162

Alternate gene names: 15602027

Gene position: 189878-188466 (Counterclockwise)

Preceding gene: 15602028

Following gene: 15602026

Centisome position: 8.41

GC content: 41.68

Gene sequence:

>1413_bases
ATGTCGAATAAAAAAATCGGTTTATTATCCCTCACCGCCTTAGTGTTAAGCTCGATGATTGGCTCGGGGATTTTTAGTTT
GCCACAAAACATGGCGGAAGTGGCAGGTGCACAAGCACTCGTTATTGGTTGGATCATTACTGGTATTGGGATCATCTTTT
TAGGTCTTTCCTTTTTCTTTATTTCCCGTTTACGTCCTGAGTTAGACGGCGGCATCTACACTTATGCTCGAGAAGGTTTT
GGCGATTTAGTCGGTTTTCTCTCTGCTTGGGGTTATTGGTTGTGTGCTACTATTGGTAGCGTTGGTTACTTAGTGGTCGC
CTTTGAGGGAATCGGTTTATTTACCGATAGTCCTAATCGTATCATTTTCGCTCAAGGCAATACGATTTTCGCCTTTCTAG
GCTCTTCTTTAGTGGTTTGGTTAGTGCATTGGCTGATTACACGAGGAGTCAAAGAAGCAGCATTTTTAAATCTCTTAGCG
ACTTTTGTCAAAGCTTTTCCGTTAGTGTTGTTTATTGTATTAGCCGCTTGGTTTTTCTCACCAGAAACCTTTAACCATGA
TATTCAAGCCACAAATTTAAATCATTCCATTACTGATCAAGTGAAAAACACCATGTTGATCACGCTCTGGGTATTCGTTG
GGGTTGAAGGGGCAGCAGTGTTATCCGCTCACGCCAAAAAACGCAGTGATGTGGGGTTAGCCACGGTGTTGGGGATTGTG
ATTGCCTTAATTTTATATGTGGCGATTACCGTATTATCTCTGGGGATCTTACCACGTGAAATGATCGCCAATATGCCCAA
TCCATCGATGGCTGGTCTGCTAGAACACCTGATTGGCAGTAGCGGTAAAATCATTATCACCGCCTGTTTAATTGTCTCTG
TGTTAGCGTCTTACATTAGTTGGACCATGTATTCTGCCGAAGTCCCTTATCGTGGCGCGCAAAACGGGGCGTTCCCGAAA
ATCTTAAATAAGATCAACGAAAACGACACGCCAATTAACTCTCTGTGGTTCACTAACCTCGTGGTGCAATTCTGTCTCGT
GTTGGTATTAATGACAGGTAAAAGCTATAACGCACTGTTGTTAATTTCCACCTCTATGATCTTAGTGCCATATTTCCTGA
TTGGTGCCTACTTATTGAAATTGTCTATTCAACAAAACAGTGCTTGGTATATCAAGCTTACTGGGTTACTTGCCTCGATT
TACGGAGTCTGGATTTTATATGCCGCCGGACTAGATCATTTATTGTTATCGATCTTGTTGTATGTCCCGGGGATTGGAAT
CTACTTATATTCTCGCTATCAGCACCAAGGCAAACTTCATTTTAATCAAAAAGAGAAAGCACTATTGCTCTTTATTGCTA
TCGCGTTTGTGTTAGCTATTTACAATAGTGCTGTCAATGTCAATTGGAATTAA

Upstream 100 bases:

>100_bases
CGCTTTAACGTCTAAAATTTTATAAAAAAGCACCGCACTTTATCACAATAAGTGCGGTGTTTTTTTGTTTAGTTTCATAA
TAAAAATAAGAGAAGACAGT

Downstream 100 bases:

>100_bases
CCCGTTAATCTTCAATCAAACAGAAAAGTGCAGTCAGTTTTTAACAATTTTTTGAAAAACTGACCGCACTTTTTCTCTCC
CAGTCCTACCTCTACCTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MSNKKIGLLSLTALVLSSMIGSGIFSLPQNMAEVAGAQALVIGWIITGIGIIFLGLSFFFISRLRPELDGGIYTYAREGF
GDLVGFLSAWGYWLCATIGSVGYLVVAFEGIGLFTDSPNRIIFAQGNTIFAFLGSSLVVWLVHWLITRGVKEAAFLNLLA
TFVKAFPLVLFIVLAAWFFSPETFNHDIQATNLNHSITDQVKNTMLITLWVFVGVEGAAVLSAHAKKRSDVGLATVLGIV
IALILYVAITVLSLGILPREMIANMPNPSMAGLLEHLIGSSGKIIITACLIVSVLASYISWTMYSAEVPYRGAQNGAFPK
ILNKINENDTPINSLWFTNLVVQFCLVLVLMTGKSYNALLLISTSMILVPYFLIGAYLLKLSIQQNSAWYIKLTGLLASI
YGVWILYAAGLDHLLLSILLYVPGIGIYLYSRYQHQGKLHFNQKEKALLLFIAIAFVLAIYNSAVNVNWN

Sequences:

>Translated_470_residues
MSNKKIGLLSLTALVLSSMIGSGIFSLPQNMAEVAGAQALVIGWIITGIGIIFLGLSFFFISRLRPELDGGIYTYAREGF
GDLVGFLSAWGYWLCATIGSVGYLVVAFEGIGLFTDSPNRIIFAQGNTIFAFLGSSLVVWLVHWLITRGVKEAAFLNLLA
TFVKAFPLVLFIVLAAWFFSPETFNHDIQATNLNHSITDQVKNTMLITLWVFVGVEGAAVLSAHAKKRSDVGLATVLGIV
IALILYVAITVLSLGILPREMIANMPNPSMAGLLEHLIGSSGKIIITACLIVSVLASYISWTMYSAEVPYRGAQNGAFPK
ILNKINENDTPINSLWFTNLVVQFCLVLVLMTGKSYNALLLISTSMILVPYFLIGAYLLKLSIQQNSAWYIKLTGLLASI
YGVWILYAAGLDHLLLSILLYVPGIGIYLYSRYQHQGKLHFNQKEKALLLFIAIAFVLAIYNSAVNVNWN
>Mature_469_residues
SNKKIGLLSLTALVLSSMIGSGIFSLPQNMAEVAGAQALVIGWIITGIGIIFLGLSFFFISRLRPELDGGIYTYAREGFG
DLVGFLSAWGYWLCATIGSVGYLVVAFEGIGLFTDSPNRIIFAQGNTIFAFLGSSLVVWLVHWLITRGVKEAAFLNLLAT
FVKAFPLVLFIVLAAWFFSPETFNHDIQATNLNHSITDQVKNTMLITLWVFVGVEGAAVLSAHAKKRSDVGLATVLGIVI
ALILYVAITVLSLGILPREMIANMPNPSMAGLLEHLIGSSGKIIITACLIVSVLASYISWTMYSAEVPYRGAQNGAFPKI
LNKINENDTPINSLWFTNLVVQFCLVLVLMTGKSYNALLLISTSMILVPYFLIGAYLLKLSIQQNSAWYIKLTGLLASIY
GVWILYAAGLDHLLLSILLYVPGIGIYLYSRYQHQGKLHFNQKEKALLLFIAIAFVLAIYNSAVNVNWN

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=459, Percent_Identity=52.5054466230937, Blast_Score=475, Evalue=1e-135,
Organism=Escherichia coli, GI2367353, Length=423, Percent_Identity=27.4231678486998, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1786908, Length=447, Percent_Identity=23.2662192393736, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1790575, Length=461, Percent_Identity=25.5965292841649, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004754 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51425; Mature: 51293

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKKIGLLSLTALVLSSMIGSGIFSLPQNMAEVAGAQALVIGWIITGIGIIFLGLSFFF
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ISRLRPELDGGIYTYAREGFGDLVGFLSAWGYWLCATIGSVGYLVVAFEGIGLFTDSPNR
HHHHCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCE
IIFAQGNTIFAFLGSSLVVWLVHWLITRGVKEAAFLNLLATFVKAFPLVLFIVLAAWFFS
EEEEECCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PETFNHDIQATNLNHSITDQVKNTMLITLWVFVGVEGAAVLSAHAKKRSDVGLATVLGIV
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
IALILYVAITVLSLGILPREMIANMPNPSMAGLLEHLIGSSGKIIITACLIVSVLASYIS
HHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
WTMYSAEVPYRGAQNGAFPKILNKINENDTPINSLWFTNLVVQFCLVLVLMTGKSYNALL
HHHEECCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LISTSMILVPYFLIGAYLLKLSIQQNSAWYIKLTGLLASIYGVWILYAAGLDHLLLSILL
EEHHHHHHHHHHHHHHHHHHHEEECCCEEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHH
YVPGIGIYLYSRYQHQGKLHFNQKEKALLLFIAIAFVLAIYNSAVNVNWN
HHCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCEECCCC
>Mature Secondary Structure 
SNKKIGLLSLTALVLSSMIGSGIFSLPQNMAEVAGAQALVIGWIITGIGIIFLGLSFFF
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ISRLRPELDGGIYTYAREGFGDLVGFLSAWGYWLCATIGSVGYLVVAFEGIGLFTDSPNR
HHHHCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCE
IIFAQGNTIFAFLGSSLVVWLVHWLITRGVKEAAFLNLLATFVKAFPLVLFIVLAAWFFS
EEEEECCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PETFNHDIQATNLNHSITDQVKNTMLITLWVFVGVEGAAVLSAHAKKRSDVGLATVLGIV
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
IALILYVAITVLSLGILPREMIANMPNPSMAGLLEHLIGSSGKIIITACLIVSVLASYIS
HHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
WTMYSAEVPYRGAQNGAFPKILNKINENDTPINSLWFTNLVVQFCLVLVLMTGKSYNALL
HHHEECCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LISTSMILVPYFLIGAYLLKLSIQQNSAWYIKLTGLLASIYGVWILYAAGLDHLLLSILL
EEHHHHHHHHHHHHHHHHHHHEEECCCEEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHH
YVPGIGIYLYSRYQHQGKLHFNQKEKALLLFIAIAFVLAIYNSAVNVNWN
HHCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]