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The map label for this gene is rbsD

Identifier: 15602021

GI number: 15602021

Start: 184091

End: 184510

Strand: Reverse

Name: rbsD

Synonym: PM0156

Alternate gene names: 15602021

Gene position: 184510-184091 (Counterclockwise)

Preceding gene: 15602023

Following gene: 15602020

Centisome position: 8.17

GC content: 40.71

Gene sequence:

>420_bases
ATGAAAAAAACCGCCCTATTAAACGCCCCGTTATCCCAAGTAATCGCGACATTAGGTCATACCGATAGCCTCACGATTTG
TGATGCGGGACTGCCGATCCCTAAACAGATAGAACGTGTTGATTTGGCTTTAAGTGCAGGGGTGCCAAGTTTTCTTCAAA
CTTTTCATGCAGTAGTCACAGAAATGTTTGTAGAAAGAGCCATCATTGCCGAAGAAATCAAAGAAAAAAATCCGAAAATA
CTGACCGCACTTTTAAACAGTTTGGCTCAACTTGAGCAACAACAAGGTAACCAAATTGAGGTGCAATATGTCAGTCATGA
CATGTTCAAAACGTACACGCATGCAAGCAAAGCAATTGTACGTAGTGGCGAATGTAGTCCTTATGCCAATATTATTTTGT
ATTCTGGCGTTCCATTTTAA

Upstream 100 bases:

>100_bases
ATCAGACAAAAGCTTTTTGCACTTTTTCAATTTCCTCTTAGACTAATCACTAAGTCATCGAAACGTTTCGATGAGAAAGA
AAAATCTATTGAGGTACGTC

Downstream 100 bases:

>100_bases
AGGCGGCGAATATGCAACACGAAACCTTACTCCACATCCAAGGAATTGATAAGTCTTTTCCCGGTGTCAAAGCGCTCAGT
AATGCTTGCTTATCCGTTTA

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKTALLNAPLSQVIATLGHTDSLTICDAGLPIPKQIERVDLALSAGVPSFLQTFHAVVTEMFVERAIIAEEIKEKNPKI
LTALLNSLAQLEQQQGNQIEVQYVSHDMFKTYTHASKAIVRSGECSPYANIILYSGVPF

Sequences:

>Translated_139_residues
MKKTALLNAPLSQVIATLGHTDSLTICDAGLPIPKQIERVDLALSAGVPSFLQTFHAVVTEMFVERAIIAEEIKEKNPKI
LTALLNSLAQLEQQQGNQIEVQYVSHDMFKTYTHASKAIVRSGECSPYANIILYSGVPF
>Mature_139_residues
MKKTALLNAPLSQVIATLGHTDSLTICDAGLPIPKQIERVDLALSAGVPSFLQTFHAVVTEMFVERAIIAEEIKEKNPKI
LTALLNSLAQLEQQQGNQIEVQYVSHDMFKTYTHASKAIVRSGECSPYANIILYSGVPF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=58.273381294964, Blast_Score=176, Evalue=6e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_PASMU (Q9CP97)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245093.1
- HSSP:   P36946
- ProteinModelPortal:   Q9CP97
- SMR:   Q9CP97
- GeneID:   1243503
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0156
- NMPDR:   fig|272843.1.peg.156
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   PMUL272843:PM0156-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15240; Mature: 15240

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALLNAPLSQVIATLGHTDSLTICDAGLPIPKQIERVDLALSAGVPSFLQTFHAVVT
CCCCHHCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
EMFVERAIIAEEIKEKNPKILTALLNSLAQLEQQQGNQIEVQYVSHDMFKTYTHASKAIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHH
RSGECSPYANIILYSGVPF
HCCCCCCHHCEEEECCCCC
>Mature Secondary Structure
MKKTALLNAPLSQVIATLGHTDSLTICDAGLPIPKQIERVDLALSAGVPSFLQTFHAVVT
CCCCHHCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
EMFVERAIIAEEIKEKNPKILTALLNSLAQLEQQQGNQIEVQYVSHDMFKTYTHASKAIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHH
RSGECSPYANIILYSGVPF
HCCCCCCHHCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100