Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is yedF
Identifier: 30023990
GI number: 30023990
Start: 437921
End: 439525
Strand: Direct
Name: yedF
Synonym: L37906
Alternate gene names: 30023990
Gene position: 437921-439525 (Clockwise)
Preceding gene: 15672408
Following gene: 15672410
Centisome position: 18.51
GC content: 39.25
Gene sequence:
>1605_bases ATGAAATGCTTCATAGATAATGAAGCAAAAGGAGAACTTATGGCAAATTATTCACAACTTGCGACTGATATTATCGCAAA TGTAGGTGGCGCTGAAAATGTCACAAAAGTTATTCATTGTATCACTCGTCTTCGTTTCACTTTAAAGGACAAGGATAAAG CCGATACAGCAGCAATTGAAGCCTTACCTGGTGTGGCAGGCGCGGTTTATAATTCAAACTTGAATCAATATCAAGTGGTT ATTGGACAAGCGGTTGAGGATGTTTATGATGAAGTTGTTGAACAACTTGGTGATGCGGTAGTTGATGATGAGGCAACGGC ACAAGCAGTCGCTGTAACAGCACCAGCTAATGGTAAAAAACAAAATCCGATTGTTCATGCTTTCCAAGTGGTCATTGGAA CAATTACTGGGTCAATGATTCCTATTATTGGTTTACTTGCAGCTGGTGGGATGATTAATGGTTTACTTAGTATCTTTGTT AAGGGAAATCGCTTAATCGAAGTGATTGATCCTGCAAGTTCAACTTATGTCATTATTTCAACACTGGCAATGACGCCCTT TTACTTCTTACCTGTTTTGGTTGGTTTTTCAGCAGCAAAACAATTGGCACCTAAAGATACTGTTTTACAATTTATTGGTG CTGCAGTCGGCGGATTTATGATTAATCCAGGGATTACTAACTTGGTAAATGCGCATGTTGGAACGAATGCGGCAGGTAAA AATGTTGTTGTTGAAGCAGCTGCTCCTGTTGCAAATTTCCTTGGAGTAACTTTTAATACAAGTTATTTTGGAATCCCCGT TGCTTTGCCAAGCTATGCTTATACAATTTTCCCAATCATTGTAGCCGTGGCAATTGCTAAACCACTGAATGCTTGGTTGA AAAAAGTTTTACCACTTGCCTTGCGTCCAATTTTCCAACCAATGATTACTTTCTTTATTACCGCATCAATTGTTTTACTT TTGGTAGGTCCAGTAATTTCTACAATTTCTTCTGGATTGTCATTTGTGATTGATCATATCTTGTCATTGAATTTAGGAAT TGCAAGTATTATCGTTGGTGGTTTGTATCAATGTTTGGTTATCTTTGGGTTGCACTGGTTGGTTGTACCACTTATTTCAC AAGAATTGGCGGCTACTGGAGCAAGTTCACTCAATATGATTGTTTCTTTCACAATGCTCGCTCAAGGGGTTGGTGCCTTG ACTGTCTTCTTTAAATCTAAAAAAGCAGACCTCAAAGGACTTTCTGCTCCAGCAGCAATTTCAGCCTTTTGTGGGGTAAC TGAACCGGCAATGTATGGGATTAATTTGAAATATGTGCGTGTCTTTATCATGTCTTCAATTGGTGCCGCGATTGGTGCAG GTGTTGCTGGATTTGGCGGATTACAAATGTTTGGGTTCTCAGGTTCTTTGATTGGTTTCCCTAACTTTATTTCTAATCCT TTGACACATCACGCTCCTGCGGGTAACTTGATGCTCTTCTGGATCGCCACTGCGGTATGTGCGGTTGCAACTTTCCTATT GGTTTGGTTCTTTGGTTATAAAGATACAGATGTAATGGGAGAAGGTGTTGAACAAAAAAATGCATTTAAAGATGCAGTTA AATAA
Upstream 100 bases:
>100_bases TAAGTAAAAATATCAACCAATAAATTTATAGCACAAAGAAGACGAGAACTTTGGATATAGATTTTGTGACTATTAAACTC GTCAATTATTATTTTATATT
Downstream 100 bases:
>100_bases TTAATAAACTCAGTTGGAGGCAGTGCTGATAAATTCTGCTTCCTTTAGTTTTATATGAGGGGGAAAAATGACTGAAAAAG ATTGGATAATCCAATATGAT
Product: beta-glucoside-specific PTS system IIABC component
Products: NA
Alternate protein names: EIIBCA-Bgl; EII-Bgl; Beta-glucoside-specific phosphotransferase enzyme IIB component; PTS system beta-glucoside-specific EIIB component; Beta-glucoside permease IIC component; PTS system beta-glucoside-specific EIIC component; Beta-glucoside-specific phosphotransferase enzyme IIA component; PTS system beta-glucoside-specific EIIA component [H]
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MKCFIDNEAKGELMANYSQLATDIIANVGGAENVTKVIHCITRLRFTLKDKDKADTAAIEALPGVAGAVYNSNLNQYQVV IGQAVEDVYDEVVEQLGDAVVDDEATAQAVAVTAPANGKKQNPIVHAFQVVIGTITGSMIPIIGLLAAGGMINGLLSIFV KGNRLIEVIDPASSTYVIISTLAMTPFYFLPVLVGFSAAKQLAPKDTVLQFIGAAVGGFMINPGITNLVNAHVGTNAAGK NVVVEAAAPVANFLGVTFNTSYFGIPVALPSYAYTIFPIIVAVAIAKPLNAWLKKVLPLALRPIFQPMITFFITASIVLL LVGPVISTISSGLSFVIDHILSLNLGIASIIVGGLYQCLVIFGLHWLVVPLISQELAATGASSLNMIVSFTMLAQGVGAL TVFFKSKKADLKGLSAPAAISAFCGVTEPAMYGINLKYVRVFIMSSIGAAIGAGVAGFGGLQMFGFSGSLIGFPNFISNP LTHHAPAGNLMLFWIATAVCAVATFLLVWFFGYKDTDVMGEGVEQKNAFKDAVK
Sequences:
>Translated_534_residues MKCFIDNEAKGELMANYSQLATDIIANVGGAENVTKVIHCITRLRFTLKDKDKADTAAIEALPGVAGAVYNSNLNQYQVV IGQAVEDVYDEVVEQLGDAVVDDEATAQAVAVTAPANGKKQNPIVHAFQVVIGTITGSMIPIIGLLAAGGMINGLLSIFV KGNRLIEVIDPASSTYVIISTLAMTPFYFLPVLVGFSAAKQLAPKDTVLQFIGAAVGGFMINPGITNLVNAHVGTNAAGK NVVVEAAAPVANFLGVTFNTSYFGIPVALPSYAYTIFPIIVAVAIAKPLNAWLKKVLPLALRPIFQPMITFFITASIVLL LVGPVISTISSGLSFVIDHILSLNLGIASIIVGGLYQCLVIFGLHWLVVPLISQELAATGASSLNMIVSFTMLAQGVGAL TVFFKSKKADLKGLSAPAAISAFCGVTEPAMYGINLKYVRVFIMSSIGAAIGAGVAGFGGLQMFGFSGSLIGFPNFISNP LTHHAPAGNLMLFWIATAVCAVATFLLVWFFGYKDTDVMGEGVEQKNAFKDAVK >Mature_534_residues MKCFIDNEAKGELMANYSQLATDIIANVGGAENVTKVIHCITRLRFTLKDKDKADTAAIEALPGVAGAVYNSNLNQYQVV IGQAVEDVYDEVVEQLGDAVVDDEATAQAVAVTAPANGKKQNPIVHAFQVVIGTITGSMIPIIGLLAAGGMINGLLSIFV KGNRLIEVIDPASSTYVIISTLAMTPFYFLPVLVGFSAAKQLAPKDTVLQFIGAAVGGFMINPGITNLVNAHVGTNAAGK NVVVEAAAPVANFLGVTFNTSYFGIPVALPSYAYTIFPIIVAVAIAKPLNAWLKKVLPLALRPIFQPMITFFITASIVLL LVGPVISTISSGLSFVIDHILSLNLGIASIIVGGLYQCLVIFGLHWLVVPLISQELAATGASSLNMIVSFTMLAQGVGAL TVFFKSKKADLKGLSAPAAISAFCGVTEPAMYGINLKYVRVFIMSSIGAAIGAGVAGFGGLQMFGFSGSLIGFPNFISNP LTHHAPAGNLMLFWIATAVCAVATFLLVWFFGYKDTDVMGEGVEQKNAFKDAVK
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790159, Length=449, Percent_Identity=30.2895322939866, Blast_Score=200, Evalue=2e-52, Organism=Escherichia coli, GI48994906, Length=521, Percent_Identity=28.0230326295585, Blast_Score=171, Evalue=1e-43, Organism=Escherichia coli, GI2367362, Length=456, Percent_Identity=28.0701754385965, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1788769, Length=518, Percent_Identity=26.2548262548263, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR018113 - InterPro: IPR001127 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011297 [H]
Pfam domain/function: PF00358 PTS_EIIA_1; PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 56076; Mature: 56076
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCFIDNEAKGELMANYSQLATDIIANVGGAENVTKVIHCITRLRFTLKDKDKADTAAIE CCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH ALPGVAGAVYNSNLNQYQVVIGQAVEDVYDEVVEQLGDAVVDDEATAQAVAVTAPANGKK HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCEEEEECCCCCCC QNPIVHAFQVVIGTITGSMIPIIGLLAAGGMINGLLSIFVKGNRLIEVIDPASSTYVIIS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHH TLAMTPFYFLPVLVGFSAAKQLAPKDTVLQFIGAAVGGFMINPGITNLVNAHVGTNAAGK HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCHHHHHHHCCCCCCCCC NVVVEAAAPVANFLGVTFNTSYFGIPVALPSYAYTIFPIIVAVAIAKPLNAWLKKVLPLA CEEEEEHHHHHHHHCCEECCCEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRPIFQPMITFFITASIVLLLVGPVISTISSGLSFVIDHILSLNLGIASIIVGGLYQCLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFGLHWLVVPLISQELAATGASSLNMIVSFTMLAQGVGALTVFFKSKKADLKGLSAPAAI HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCHHH SAFCGVTEPAMYGINLKYVRVFIMSSIGAAIGAGVAGFGGLQMFGFSGSLIGFPNFISNP HHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHCCC LTHHAPAGNLMLFWIATAVCAVATFLLVWFFGYKDTDVMGEGVEQKNAFKDAVK CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCC >Mature Secondary Structure MKCFIDNEAKGELMANYSQLATDIIANVGGAENVTKVIHCITRLRFTLKDKDKADTAAIE CCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH ALPGVAGAVYNSNLNQYQVVIGQAVEDVYDEVVEQLGDAVVDDEATAQAVAVTAPANGKK HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCEEEEECCCCCCC QNPIVHAFQVVIGTITGSMIPIIGLLAAGGMINGLLSIFVKGNRLIEVIDPASSTYVIIS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHH TLAMTPFYFLPVLVGFSAAKQLAPKDTVLQFIGAAVGGFMINPGITNLVNAHVGTNAAGK HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCHHHHHHHCCCCCCCCC NVVVEAAAPVANFLGVTFNTSYFGIPVALPSYAYTIFPIIVAVAIAKPLNAWLKKVLPLA CEEEEEHHHHHHHHCCEECCCEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRPIFQPMITFFITASIVLLLVGPVISTISSGLSFVIDHILSLNLGIASIIVGGLYQCLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFGLHWLVVPLISQELAATGASSLNMIVSFTMLAQGVGALTVFFKSKKADLKGLSAPAAI HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCHHH SAFCGVTEPAMYGINLKYVRVFIMSSIGAAIGAGVAGFGGLQMFGFSGSLIGFPNFISNP HHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHCCC LTHHAPAGNLMLFWIATAVCAVATFLLVWFFGYKDTDVMGEGVEQKNAFKDAVK CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]