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The map label for this gene is ytdF

Identifier: 15673850

GI number: 15673850

Start: 1936993

End: 1937670

Strand: Reverse

Name: ytdF

Synonym: L120355

Alternate gene names: 15673850

Gene position: 1937670-1936993 (Counterclockwise)

Preceding gene: 15673851

Following gene: 15673849

Centisome position: 81.91

GC content: 32.6

Gene sequence:

>678_bases
ATGACGATTAAAGAGAATGTTAAAAGAATACTGAGTAATGTAGATGCGGCAAAGGCTGCGTCTTCTTATTCTAATCAGTC
AGTTTCAGTCGTCGCTGTGACCAAATCTGTTGATGCTAATCTTGCACGTGAAGTTTTTGAAAATGGAGTTTCACATTTAG
CGGAAAATCGAACAGAACTTTTTTTGGAAAAATACGAAGCTCTTAAGGATTTAGAAATTACTTGGCATTTGATTGGTAAT
TTACAAAGACGTAAGGTTAAACAAGTTATTAATTATGTTGATTATTTCCATGCTTTAGATTCTCTGAAATTAGCTCAGGA
AATAAATAAACGTGCTGAACACACCATTAAATGTTTTATTGAACTTAACATTTCTGGCGAGGAAAGTAAACATGGATTTT
CTGTCAATGAACTTATGGAAATATTACCTGAGTTTTCTGAATTGGAAAATATTGAGATTGTTGGTTTGATGACAATGGCT
CCGTTTGATGCGACTGAAAGTGAATGTAATGACATTTTTGGACGAATGAAAAAATTACAAGTTGAAATATCCGAAATGAA
TCTTTCCAGAATTCCTTGTACTGAATTAAGTATGGGAATGAGCAGAGATTATGAGATTGCCATTAAAAATGGTGCAACTT
TTGTTCGAATCGGTACAGAATTTTTTAAAAATCTATAA

Upstream 100 bases:

>100_bases
AAGTAACACACGTGATACTTCTTCAGTAACAAGTTTCGGCGGAGTTCCAACAACAGATGAAGACCTTGACACACCACCAT
TCTTCCGTAAAAACTAACCA

Downstream 100 bases:

>100_bases
GTCTTAAGATTAACGTAAACAACGGAGGAAAATATGGCATTTAAAGATTGGATGAATAATCTACGTGATTATTTTGTAGA
GGATGATGAAGAGTTCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTELFLEKYEALKDLEITWHLIGN
LQRRKVKQVINYVDYFHALDSLKLAQEINKRAEHTIKCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMA
PFDATESECNDIFGRMKKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFFKNL

Sequences:

>Translated_225_residues
MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTELFLEKYEALKDLEITWHLIGN
LQRRKVKQVINYVDYFHALDSLKLAQEINKRAEHTIKCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMA
PFDATESECNDIFGRMKKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFFKNL
>Mature_224_residues
TIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTELFLEKYEALKDLEITWHLIGNL
QRRKVKQVINYVDYFHALDSLKLAQEINKRAEHTIKCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAP
FDATESECNDIFGRMKKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFFKNL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=209, Percent_Identity=35.8851674641148, Blast_Score=107, Evalue=8e-24,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=32.15859030837, Blast_Score=110, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=234, Percent_Identity=30.3418803418803, Blast_Score=93, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=222, Percent_Identity=30.6306306306306, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45550861, Length=237, Percent_Identity=27.0042194092827, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25561; Mature: 25429

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTEL
CCCHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
FLEKYEALKDLEITWHLIGNLQRRKVKQVINYVDYFHALDSLKLAQEINKRAEHTIKCFI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
ELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAPFDATESECNDIFGRMKKLQ
EEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
VEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFFKNL
HHHHHCCCCCCCHHHHHCCCCCCEEEEEECCCEEEEECHHHHHCC
>Mature Secondary Structure 
TIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTEL
CCHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
FLEKYEALKDLEITWHLIGNLQRRKVKQVINYVDYFHALDSLKLAQEINKRAEHTIKCFI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
ELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAPFDATESECNDIFGRMKKLQ
EEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
VEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFFKNL
HHHHHCCCCCCCHHHHHCCCCCCEEEEEECCCEEEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]