| Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
|---|---|
| Accession | NC_002662 |
| Length | 2,365,589 |
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The map label for this gene is ysdB
Identifier: 15673757
GI number: 15673757
Start: 1834852
End: 1835784
Strand: Reverse
Name: ysdB
Synonym: L18206
Alternate gene names: 15673757
Gene position: 1835784-1834852 (Counterclockwise)
Preceding gene: 15673758
Following gene: 15673756
Centisome position: 77.6
GC content: 38.26
Gene sequence:
>933_bases ATGACATTAAAGATTGACAAAGTTCGAAAAAGCTTTGGTGATAAAATCGCTGTTGATAATCTCAATATGGTTGTTAAACC AGGTGAAGTTATGGGCTTAATTGGTCAAAATGGTGCTGGGAAAACAACGACTTTTCGGATGATTCTTAATTTTATATCAG CTGACCAAGGGAAAATTACTTGGCAAGATGGACCGATTACGCAAGAAATCAAGCAAAAAATTGGTTTCTTACCCGAAGAA CGTGGTCTTTATCAAAAGATGACAGTTGAAGACCAAATTCTTTATTTTGCGGAACTCCATGGAATGAAACGAGCAGATGC CCGGATAAAGTTACAAGACTGGATGAAACGTTTAGAGGTCGTTGGTAAACCAACCGACAAAGTTCAAACCCTTTCTAAAG GGAATGCCCAAAAAATTCAATTCATTGCCACTTTGATTCATGAGCCTGAATTTTTGATTTTGGATGAGCCATTTACAGGG CTTGACCCAGTGAATACAGAACTCTTGCGAAATGAGATTAAACGGAGTCGTGATAAGGGAGCGGCGGTTATTTTCTCTAA CCATAATATGAGTGATGTTGAGCTTTTATCTGACCATTTGTTAATGCTAAAAGGCGGTCAAACAATTTTAAATGGAACGG TTGAAGCCATTCGAGCTTCTTATGGCCGTACCCGTATTTATTTGGAGTCTGATCTGCCCAATGAAGAGCTCTCTGTAATT ACAGGAGTTGAATCAATTGAAAAAAGAGGAAGTGGTCGTTCAATAAAAATATCTGAGGCAGAAGTTGGACGTGAAATTTT CCAAAAAGTGGCTAAAGATGGCTATGTTCAAGCATTTGTTCAGTCTCCACCGTCACTAGATGAAATTTTCCGAATGGAAG CAGCTGAGAACAATCAAGAAAATTTAAGTGCAAGAAGTGAGGAAATAAAATGA
Upstream 100 bases:
>100_bases ACAAAATTAAGACATTTTTTGTCTTACCTAAGAGGGAAAAGGAGGTTAAAAGTGAAAATAAAATGATATAATTAGAAAAA AAGGAAGAGTAAGGAAAATT
Downstream 100 bases:
>100_bases AAAATCAAGCTTGGCTTGTTGCAAAAAATATTTACCGAAGTCGTGTCAAAGGAGTGGGCTTTTGGGCACTTGTCCTTTCA CCATTTTTGCTAGGAGCGAT
Product: ABC transporter ATP binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MTLKIDKVRKSFGDKIAVDNLNMVVKPGEVMGLIGQNGAGKTTTFRMILNFISADQGKITWQDGPITQEIKQKIGFLPEE RGLYQKMTVEDQILYFAELHGMKRADARIKLQDWMKRLEVVGKPTDKVQTLSKGNAQKIQFIATLIHEPEFLILDEPFTG LDPVNTELLRNEIKRSRDKGAAVIFSNHNMSDVELLSDHLLMLKGGQTILNGTVEAIRASYGRTRIYLESDLPNEELSVI TGVESIEKRGSGRSIKISEAEVGREIFQKVAKDGYVQAFVQSPPSLDEIFRMEAAENNQENLSARSEEIK
Sequences:
>Translated_310_residues MTLKIDKVRKSFGDKIAVDNLNMVVKPGEVMGLIGQNGAGKTTTFRMILNFISADQGKITWQDGPITQEIKQKIGFLPEE RGLYQKMTVEDQILYFAELHGMKRADARIKLQDWMKRLEVVGKPTDKVQTLSKGNAQKIQFIATLIHEPEFLILDEPFTG LDPVNTELLRNEIKRSRDKGAAVIFSNHNMSDVELLSDHLLMLKGGQTILNGTVEAIRASYGRTRIYLESDLPNEELSVI TGVESIEKRGSGRSIKISEAEVGREIFQKVAKDGYVQAFVQSPPSLDEIFRMEAAENNQENLSARSEEIK >Mature_309_residues TLKIDKVRKSFGDKIAVDNLNMVVKPGEVMGLIGQNGAGKTTTFRMILNFISADQGKITWQDGPITQEIKQKIGFLPEER GLYQKMTVEDQILYFAELHGMKRADARIKLQDWMKRLEVVGKPTDKVQTLSKGNAQKIQFIATLIHEPEFLILDEPFTGL DPVNTELLRNEIKRSRDKGAAVIFSNHNMSDVELLSDHLLMLKGGQTILNGTVEAIRASYGRTRIYLESDLPNEELSVIT GVESIEKRGSGRSIKISEAEVGREIFQKVAKDGYVQAFVQSPPSLDEIFRMEAAENNQENLSARSEEIK
Specific function: Unknown
COG id: COG4152
COG function: function code R; ABC-type uncharacterized transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=210, Percent_Identity=32.8571428571429, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI153792144, Length=217, Percent_Identity=28.5714285714286, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI47078218, Length=222, Percent_Identity=30.6306306306306, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI45446740, Length=222, Percent_Identity=30.6306306306306, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI27477115, Length=223, Percent_Identity=30.0448430493274, Blast_Score=115, Evalue=6e-26, Organism=Homo sapiens, GI27881501, Length=213, Percent_Identity=29.5774647887324, Blast_Score=113, Evalue=3e-25, Organism=Homo sapiens, GI30795238, Length=213, Percent_Identity=29.5774647887324, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI6005701, Length=213, Percent_Identity=27.2300469483568, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=32.3809523809524, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI27436953, Length=234, Percent_Identity=26.9230769230769, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=27.9279279279279, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI21536376, Length=212, Percent_Identity=28.3018867924528, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI150417984, Length=209, Percent_Identity=27.7511961722488, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=25, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=25, Blast_Score=91, Evalue=9e-19, Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=27.8481012658228, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI87081782, Length=216, Percent_Identity=28.7037037037037, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=26.457399103139, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=28.0193236714976, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=28.3400809716599, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=27.7777777777778, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=28.3898305084746, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1788225, Length=246, Percent_Identity=24.7967479674797, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788165, Length=220, Percent_Identity=28.1818181818182, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787712, Length=227, Percent_Identity=25.5506607929515, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=23.8317757009346, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787370, Length=213, Percent_Identity=23.943661971831, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789991, Length=224, Percent_Identity=26.3392857142857, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=27.6995305164319, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=24.5535714285714, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25.4545454545455, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=27.3972602739726, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=23.9234449760766, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=25.5605381165919, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788761, Length=213, Percent_Identity=27.2300469483568, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=23.8095238095238, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789586, Length=229, Percent_Identity=25.764192139738, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786975, Length=210, Percent_Identity=30, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=22.3214285714286, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=248, Percent_Identity=22.5806451612903, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=22.1276595744681, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787500, Length=221, Percent_Identity=24.4343891402715, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994997, Length=237, Percent_Identity=23.2067510548523, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87081791, Length=218, Percent_Identity=22.9357798165138, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=23.943661971831, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI145693107, Length=288, Percent_Identity=25.3472222222222, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1789891, Length=230, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI48994883, Length=234, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=25, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1786345, Length=209, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790544, Length=232, Percent_Identity=18.5344827586207, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788506, Length=215, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=235, Percent_Identity=24.2553191489362, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=23.6363636363636, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790162, Length=217, Percent_Identity=28.110599078341, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI2367384, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789751, Length=161, Percent_Identity=27.9503105590062, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=22.8571428571429, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=22.5806451612903, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=25.3807106598985, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533608, Length=302, Percent_Identity=26.8211920529801, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17565586, Length=220, Percent_Identity=27.7272727272727, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71983523, Length=320, Percent_Identity=27.8125, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71983510, Length=320, Percent_Identity=27.8125, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71983516, Length=320, Percent_Identity=27.8125, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17510237, Length=228, Percent_Identity=29.3859649122807, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17558664, Length=230, Percent_Identity=25.2173913043478, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17533971, Length=196, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI86563255, Length=211, Percent_Identity=27.0142180094787, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71992290, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17539902, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569145, Length=217, Percent_Identity=22.5806451612903, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=265, Percent_Identity=24.9056603773585, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574150, Length=273, Percent_Identity=29.6703296703297, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI116007328, Length=273, Percent_Identity=29.6703296703297, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI24666092, Length=323, Percent_Identity=26.625386996904, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24643674, Length=227, Percent_Identity=28.1938325991189, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI281362751, Length=210, Percent_Identity=30.952380952381, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24650855, Length=190, Percent_Identity=32.1052631578947, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24650853, Length=190, Percent_Identity=32.1052631578947, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI85725262, Length=235, Percent_Identity=27.2340425531915, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24582014, Length=217, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24582012, Length=217, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI221512771, Length=232, Percent_Identity=28.0172413793103, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24648314, Length=222, Percent_Identity=23.8738738738739, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI116007184, Length=206, Percent_Identity=26.6990291262136, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI221500365, Length=206, Percent_Identity=26.6990291262136, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI28573571, Length=220, Percent_Identity=25, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI28573573, Length=213, Percent_Identity=25.8215962441315, Blast_Score=92, Evalue=6e-19, Organism=Drosophila melanogaster, GI28571209, Length=213, Percent_Identity=24.4131455399061, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI221500419, Length=205, Percent_Identity=22.4390243902439, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI17136592, Length=284, Percent_Identity=25, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 34825; Mature: 34693
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKIDKVRKSFGDKIAVDNLNMVVKPGEVMGLIGQNGAGKTTTFRMILNFISADQGKIT CCEEHHHHHHHHCCEEEECCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE WQDGPITQEIKQKIGFLPEERGLYQKMTVEDQILYFAELHGMKRADARIKLQDWMKRLEV ECCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH VGKPTDKVQTLSKGNAQKIQFIATLIHEPEFLILDEPFTGLDPVNTELLRNEIKRSRDKG CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC AAVIFSNHNMSDVELLSDHLLMLKGGQTILNGTVEAIRASYGRTRIYLESDLPNEELSVI CEEEEECCCCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH TGVESIEKRGSGRSIKISEAEVGREIFQKVAKDGYVQAFVQSPPSLDEIFRMEAAENNQE HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCEEHHHCCCCCHHHHHHHHHCCCCHH NLSARSEEIK HHHHHHHCCC >Mature Secondary Structure TLKIDKVRKSFGDKIAVDNLNMVVKPGEVMGLIGQNGAGKTTTFRMILNFISADQGKIT CEEHHHHHHHHCCEEEECCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE WQDGPITQEIKQKIGFLPEERGLYQKMTVEDQILYFAELHGMKRADARIKLQDWMKRLEV ECCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH VGKPTDKVQTLSKGNAQKIQFIATLIHEPEFLILDEPFTGLDPVNTELLRNEIKRSRDKG CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC AAVIFSNHNMSDVELLSDHLLMLKGGQTILNGTVEAIRASYGRTRIYLESDLPNEELSVI CEEEEECCCCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH TGVESIEKRGSGRSIKISEAEVGREIFQKVAKDGYVQAFVQSPPSLDEIFRMEAAENNQE HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCEEHHHCCCCCHHHHHHHHHCCCCHH NLSARSEEIK HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]