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The map label for this gene is ysdA

Identifier: 15673756

GI number: 15673756

Start: 1833494

End: 1834855

Strand: Reverse

Name: ysdA

Synonym: L16848

Alternate gene names: 15673756

Gene position: 1834855-1833494 (Counterclockwise)

Preceding gene: 15673757

Following gene: 15673755

Centisome position: 77.56

GC content: 37.52

Gene sequence:

>1362_bases
ATGAAAAATCAAGCTTGGCTTGTTGCAAAAAATATTTACCGAAGTCGTGTCAAAGGAGTGGGCTTTTGGGCACTTGTCCT
TTCACCATTTTTGCTAGGAGCGATTTATTTAATTATCGGTTTAGTCATCAGTAGCGGGGCTAATCAAAGTCCAAAAATGG
CTGTAGTCGATAATCCTGCTCTAACTCAGATTCTTTCTAAAAATGACACTTTAAAAGCAGATATTCGTAACGAGTCTTCT
TTAGATGACGCTAAGAAAGACCTTTCTTCCGGAAAAATTGATGGATTTTTAACCGAAGATAATGGAGCTTATACCATTGT
CACTGATAATAAATCAAGTGTCAAATTTGACCAATCAAGTTTTCAAACTGCGCTGACTCAAGTTAATATTTCAAAAACAG
CACAACGTCTCAATCTGTCAGCCGCTGATGTTCAAGACCTTCTTAGTCCAGCTAAGTTTACAATGAAAACACAAACAAGT
TCTGGACAAAAGTCAACAGGTGATGGACAGACTGGCGCGAATATCGCAATTGGCTCCATTGCCTCGATTTTAATTTTCAC
ATTGATGATGATGTATGTGGGAATCATCGGACAGGAAATTGGTAATGAAAAATCTAGTCGAATTATGGAGACGTTACTCG
CGGCCACTAGCTCAAACGTACAGTATTATGGGAAAATTATTGGTGTAATTCTACTATTAGCGACTCAGCTTGGAATTTAT
GTGCTTGGTTTTGGAATTGCTTATCCTTTTATCAAAAATTTAGATCAGATTAAAGCAATTGGTGCCATGCTTTCAGGGAT
TACTTTCGGTTTCGGAATTTATTTGGTAGCCATGTCTTTAATTGGGATTTTAGGTTATTTAATTCTCGCATCAATTGTGG
CATCTCTGGTTAATGAACAAGCTCAGGTGCAACAAGCTACTCAGCCAATTGCCTTTTTAGCGATGATTGGTTATATTGGG
GGAATTGCTGGCTCGACTGTTCCGGGGAATATTGTTTTGAAAGTTCTTAGTTTTATTCCATTTATCAGTCCAACATTGAT
GACTAGCCGACTGGCTATTCAATATTCAACAACGACAGAAGCCTGGATTGCTCTTGGATTACAACTTTTAGCAACGCTTG
CAATAGCAAAAGCGGGTGAGAAAATTTATGCGCGAAATGTTCTTTCTTACAGCGACGAAAAAATTATGAGTCAACTTTTT
AAAGGACTGACAGGTCGAAATTCAAAGAAAAAAACAACTGACAGACTGGTCAGTGAAAATGGTGAAAAGAAAAATCCATG
GCGGAGAAATTCTCCATTGCGTCTAGCTCTTGTCATCATTATCATTCTAATAATTTTGGCTTATCGATTCATCTTTAAAT
AA

Upstream 100 bases:

>100_bases
AAGCATTTGTTCAGTCTCCACCGTCACTAGATGAAATTTTCCGAATGGAAGCAGCTGAGAACAATCAAGAAAATTTAAGT
GCAAGAAGTGAGGAAATAAA

Downstream 100 bases:

>100_bases
AAAATATTTTATAATTCAACTCTTGGAAACTTTCCAAGAGTTTTTTCGTATATAAAAGTATGGATAAGATTTTAGAAAAA
GTAAAAGAATATTGGAAAAT

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKNQAWLVAKNIYRSRVKGVGFWALVLSPFLLGAIYLIIGLVISSGANQSPKMAVVDNPALTQILSKNDTLKADIRNESS
LDDAKKDLSSGKIDGFLTEDNGAYTIVTDNKSSVKFDQSSFQTALTQVNISKTAQRLNLSAADVQDLLSPAKFTMKTQTS
SGQKSTGDGQTGANIAIGSIASILIFTLMMMYVGIIGQEIGNEKSSRIMETLLAATSSNVQYYGKIIGVILLLATQLGIY
VLGFGIAYPFIKNLDQIKAIGAMLSGITFGFGIYLVAMSLIGILGYLILASIVASLVNEQAQVQQATQPIAFLAMIGYIG
GIAGSTVPGNIVLKVLSFIPFISPTLMTSRLAIQYSTTTEAWIALGLQLLATLAIAKAGEKIYARNVLSYSDEKIMSQLF
KGLTGRNSKKKTTDRLVSENGEKKNPWRRNSPLRLALVIIIILIILAYRFIFK

Sequences:

>Translated_453_residues
MKNQAWLVAKNIYRSRVKGVGFWALVLSPFLLGAIYLIIGLVISSGANQSPKMAVVDNPALTQILSKNDTLKADIRNESS
LDDAKKDLSSGKIDGFLTEDNGAYTIVTDNKSSVKFDQSSFQTALTQVNISKTAQRLNLSAADVQDLLSPAKFTMKTQTS
SGQKSTGDGQTGANIAIGSIASILIFTLMMMYVGIIGQEIGNEKSSRIMETLLAATSSNVQYYGKIIGVILLLATQLGIY
VLGFGIAYPFIKNLDQIKAIGAMLSGITFGFGIYLVAMSLIGILGYLILASIVASLVNEQAQVQQATQPIAFLAMIGYIG
GIAGSTVPGNIVLKVLSFIPFISPTLMTSRLAIQYSTTTEAWIALGLQLLATLAIAKAGEKIYARNVLSYSDEKIMSQLF
KGLTGRNSKKKTTDRLVSENGEKKNPWRRNSPLRLALVIIIILIILAYRFIFK
>Mature_453_residues
MKNQAWLVAKNIYRSRVKGVGFWALVLSPFLLGAIYLIIGLVISSGANQSPKMAVVDNPALTQILSKNDTLKADIRNESS
LDDAKKDLSSGKIDGFLTEDNGAYTIVTDNKSSVKFDQSSFQTALTQVNISKTAQRLNLSAADVQDLLSPAKFTMKTQTS
SGQKSTGDGQTGANIAIGSIASILIFTLMMMYVGIIGQEIGNEKSSRIMETLLAATSSNVQYYGKIIGVILLLATQLGIY
VLGFGIAYPFIKNLDQIKAIGAMLSGITFGFGIYLVAMSLIGILGYLILASIVASLVNEQAQVQQATQPIAFLAMIGYIG
GIAGSTVPGNIVLKVLSFIPFISPTLMTSRLAIQYSTTTEAWIALGLQLLATLAIAKAGEKIYARNVLSYSDEKIMSQLF
KGLTGRNSKKKTTDRLVSENGEKKNPWRRNSPLRLALVIIIILIILAYRFIFK

Specific function: Unknown

COG id: COG1668

COG function: function code CP; ABC-type Na+ efflux pump, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1024 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48908; Mature: 48908

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQAWLVAKNIYRSRVKGVGFWALVLSPFLLGAIYLIIGLVISSGANQSPKMAVVDNPA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHH
LTQILSKNDTLKADIRNESSLDDAKKDLSSGKIDGFLTEDNGAYTIVTDNKSSVKFDQSS
HHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCCHHH
FQTALTQVNISKTAQRLNLSAADVQDLLSPAKFTMKTQTSSGQKSTGDGQTGANIAIGSI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
ASILIFTLMMMYVGIIGQEIGNEKSSRIMETLLAATSSNVQYYGKIIGVILLLATQLGIY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VLGFGIAYPFIKNLDQIKAIGAMLSGITFGFGIYLVAMSLIGILGYLILASIVASLVNEQ
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQVQQATQPIAFLAMIGYIGGIAGSTVPGNIVLKVLSFIPFISPTLMTSRLAIQYSTTTE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHH
AWIALGLQLLATLAIAKAGEKIYARNVLSYSDEKIMSQLFKGLTGRNSKKKTTDRLVSEN
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
GEKKNPWRRNSPLRLALVIIIILIILAYRFIFK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNQAWLVAKNIYRSRVKGVGFWALVLSPFLLGAIYLIIGLVISSGANQSPKMAVVDNPA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHH
LTQILSKNDTLKADIRNESSLDDAKKDLSSGKIDGFLTEDNGAYTIVTDNKSSVKFDQSS
HHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCCHHH
FQTALTQVNISKTAQRLNLSAADVQDLLSPAKFTMKTQTSSGQKSTGDGQTGANIAIGSI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
ASILIFTLMMMYVGIIGQEIGNEKSSRIMETLLAATSSNVQYYGKIIGVILLLATQLGIY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VLGFGIAYPFIKNLDQIKAIGAMLSGITFGFGIYLVAMSLIGILGYLILASIVASLVNEQ
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQVQQATQPIAFLAMIGYIGGIAGSTVPGNIVLKVLSFIPFISPTLMTSRLAIQYSTTTE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHH
AWIALGLQLLATLAIAKAGEKIYARNVLSYSDEKIMSQLFKGLTGRNSKKKTTDRLVSEN
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
GEKKNPWRRNSPLRLALVIIIILIILAYRFIFK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]