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The map label for this gene is ykhD

Identifier: 15673042

GI number: 15673042

Start: 1072170

End: 1072709

Strand: Reverse

Name: ykhD

Synonym: L71932

Alternate gene names: 15673042

Gene position: 1072709-1072170 (Counterclockwise)

Preceding gene: 15673047

Following gene: 15673014

Centisome position: 45.35

GC content: 38.7

Gene sequence:

>540_bases
ATGACTGATCATAAACCAAGCAAAAGCTTGCCTAAAGCAACTGCTAAACGACTGCCACAGTACTATCGACTGTTCAAAAG
TCTTGTCGAAGAAAATGTGACACGCACAAACTCACAACTTATTTCAGAAAAAATTGGAGTAGATGCTGCCACAATTCGCC
GAGATTTCTCTTTATTTGGCGAATTAGGCCGACGTGGATACGGCTATGAAACGAAAGTGCTCCGTGATTTCTTTGGAGAA
CTTCTTGGCCAAGACCAAGAAACGCATATCGCTCTGATTGGTGTCGGAAATCTCGGTCGTGCATTACTTCATTATCAATT
CCAAGATAGAAACAAAATGAGAATCACGCAAGCCTATGATATTTCTGGCAATCCCTTAGTTGGAACACAAACAGATGATG
GAATTCCAATTTATAATATTTCTGATTTAGAAAAAAATGTTAAAAAATCGGATATCAAAACAGCAATTCTCTCTGTTCGC
AAAGAAAATGCCCAAGAAGTTGTTGACACTCTAGTCAAAGCTGGTATCAAAGTTTCCTAA

Upstream 100 bases:

>100_bases
TTTTGTTTGATAATTTCACAAATTTTTGATAAAATTATCACAAAGAAACTAAATATTAATTAGTTTTAATAAAATCGAAT
TAAATTTTTGAGGTATAACA

Downstream 100 bases:

>100_bases
ACTTTGCCCCAATTCGTTTGAAAGTCCCTTCAGATGTGGTTGTTCAATCAATTGACTTAACTAAGGAGCTGCAAACACTA
CTATTTTTCATGAACGATAA

Product: redox-sensing transcriptional repressor Rex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTDHKPSKSLPKATAKRLPQYYRLFKSLVEENVTRTNSQLISEKIGVDAATIRRDFSLFGELGRRGYGYETKVLRDFFGE
LLGQDQETHIALIGVGNLGRALLHYQFQDRNKMRITQAYDISGNPLVGTQTDDGIPIYNISDLEKNVKKSDIKTAILSVR
KENAQEVVDTLVKAGIKVS

Sequences:

>Translated_179_residues
MTDHKPSKSLPKATAKRLPQYYRLFKSLVEENVTRTNSQLISEKIGVDAATIRRDFSLFGELGRRGYGYETKVLRDFFGE
LLGQDQETHIALIGVGNLGRALLHYQFQDRNKMRITQAYDISGNPLVGTQTDDGIPIYNISDLEKNVKKSDIKTAILSVR
KENAQEVVDTLVKAGIKVS
>Mature_178_residues
TDHKPSKSLPKATAKRLPQYYRLFKSLVEENVTRTNSQLISEKIGVDAATIRRDFSLFGELGRRGYGYETKVLRDFFGEL
LGQDQETHIALIGVGNLGRALLHYQFQDRNKMRITQAYDISGNPLVGTQTDDGIPIYNISDLEKNVKKSDIKTAILSVRK
ENAQEVVDTLVKAGIKVS

Specific function: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state

COG id: COG2344

COG function: function code R; AT-rich DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory rex family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REX_LACLA (Q9CGN6)

Other databases:

- EMBL:   AE005176
- PIR:   D86757
- RefSeq:   NP_267216.1
- ProteinModelPortal:   Q9CGN6
- SMR:   Q9CGN6
- GeneID:   1114699
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L71932
- HOGENOM:   HBG482264
- ProtClustDB:   PRK05472
- BioCyc:   LLAC272623:L71932-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01131
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR009718
- InterPro:   IPR022876
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00881

Pfam domain/function: PF02629 CoA_binding; PF06971 Put_DNA-bind_N

EC number: NA

Molecular weight: Translated: 20116; Mature: 19985

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDHKPSKSLPKATAKRLPQYYRLFKSLVEENVTRTNSQLISEKIGVDAATIRRDFSLFG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELGRRGYGYETKVLRDFFGELLGQDQETHIALIGVGNLGRALLHYQFQDRNKMRITQAYD
HHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEEEE
ISGNPLVGTQTDDGIPIYNISDLEKNVKKSDIKTAILSVRKENAQEVVDTLVKAGIKVS
CCCCCEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDHKPSKSLPKATAKRLPQYYRLFKSLVEENVTRTNSQLISEKIGVDAATIRRDFSLFG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELGRRGYGYETKVLRDFFGELLGQDQETHIALIGVGNLGRALLHYQFQDRNKMRITQAYD
HHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEEEE
ISGNPLVGTQTDDGIPIYNISDLEKNVKKSDIKTAILSVRKENAQEVVDTLVKAGIKVS
CCCCCEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471