Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is cspD

Identifier: 15672511

GI number: 15672511

Start: 517114

End: 517314

Strand: Direct

Name: cspD

Synonym: L117090

Alternate gene names: 15672511

Gene position: 517114-517314 (Clockwise)

Preceding gene: 15672510

Following gene: 15672513

Centisome position: 21.86

GC content: 36.82

Gene sequence:

>201_bases
ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTT
CGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAG
GTCAACGTGGTCTTCAAGCAGTCAATATCACAAAAGCATAA

Upstream 100 bases:

>100_bases
TGTTACTATGAGAAAGTAGATTTTGTCATGAGTAAAATGTTTTATCGATTCACTTTTCGCAAAATGAGATTTACAATTTT
GTCGAAAGGAAATAAATATT

Downstream 100 bases:

>100_bases
TTATATTTGAAAATCGTGCATAAACTGGAGCAGTAGCTTCAGTTTTTTTAATACGATGTTGTAATTCTAGGATAGTATGT
TATACTTAGCCAGCAAGAGG

Product: cold shock protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA

Sequences:

>Translated_66_residues
MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA
>Mature_65_residues
ANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=66, Percent_Identity=45.4545454545455, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=68.2539682539683, Blast_Score=90, Evalue=2e-20,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=64.5161290322581, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=64.5161290322581, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=4e-18,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=60.655737704918, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=59.6774193548387, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=54.5454545454545, Blast_Score=76, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=45.1612903225806, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7243; Mature: 7112

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQA
CCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEE
VNITKA
EEEECC
>Mature Secondary Structure 
ANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQA
CCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEE
VNITKA
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]