Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is cspD
Identifier: 15672511
GI number: 15672511
Start: 517114
End: 517314
Strand: Direct
Name: cspD
Synonym: L117090
Alternate gene names: 15672511
Gene position: 517114-517314 (Clockwise)
Preceding gene: 15672510
Following gene: 15672513
Centisome position: 21.86
GC content: 36.82
Gene sequence:
>201_bases ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTT CGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAG GTCAACGTGGTCTTCAAGCAGTCAATATCACAAAAGCATAA
Upstream 100 bases:
>100_bases TGTTACTATGAGAAAGTAGATTTTGTCATGAGTAAAATGTTTTATCGATTCACTTTTCGCAAAATGAGATTTACAATTTT GTCGAAAGGAAATAAATATT
Downstream 100 bases:
>100_bases TTATATTTGAAAATCGTGCATAAACTGGAGCAGTAGCTTCAGTTTTTTTAATACGATGTTGTAATTCTAGGATAGTATGT TATACTTAGCCAGCAAGAGG
Product: cold shock protein D
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 66; Mature: 65
Protein sequence:
>66_residues MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA
Sequences:
>Translated_66_residues MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA >Mature_65_residues ANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA
Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]
COG id: COG1278
COG function: function code K; Cold shock proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CSD (cold-shock) domain [H]
Homologues:
Organism=Homo sapiens, GI156415990, Length=66, Percent_Identity=45.4545454545455, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=68.2539682539683, Blast_Score=90, Evalue=2e-20, Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=64.5161290322581, Blast_Score=87, Evalue=2e-19, Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=64.5161290322581, Blast_Score=85, Evalue=1e-18, Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=4e-18, Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=60.655737704918, Blast_Score=80, Evalue=3e-17, Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=59.6774193548387, Blast_Score=79, Evalue=6e-17, Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=54.5454545454545, Blast_Score=76, Evalue=5e-16, Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=45.1612903225806, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019844 - InterPro: IPR012156 - InterPro: IPR011129 - InterPro: IPR002059 - InterPro: IPR012340 - InterPro: IPR016027 [H]
Pfam domain/function: PF00313 CSD [H]
EC number: NA
Molecular weight: Translated: 7243; Mature: 7112
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS00352 COLD_SHOCK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQA CCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEE VNITKA EEEECC >Mature Secondary Structure ANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQA CCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEE VNITKA EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296 [H]