Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is ligA
Identifier: 15672401
GI number: 15672401
Start: 424521
End: 426485
Strand: Direct
Name: ligA
Synonym: L0304
Alternate gene names: 15672401
Gene position: 424521-426485 (Clockwise)
Preceding gene: 15672400
Following gene: 15672402
Centisome position: 17.95
GC content: 38.98
Gene sequence:
>1965_bases ATGAATATCGAGTCAAAAATAAAAGAGCTTACGGAAAAATTAAATCAGTATGCTTATGAATATTATACTTTAGATGAGCC TTCGGTAGAAGACAGTGAGTACGATCGACTCTATCAAGAATTGGTAAAATTGGAGGCTGAAAATCCACAACTAACTAGAG CGGATTCTCCAACGCACCGAACAGGTGGGGTTATTTTAGATGGATTTGTTAAATTTAGACACCCTTATAATCTCTATAGT TTAGGGGATGTTTTTTCGCGTGAAGAATTAGCAGTTTGGGAAGAACGAGTCCGCAAGGAAATTGCTAATCCAGAGTATAT TTGTGAATTAAAAATTGATGGTCTTTCATTGTCTCTTTATTATGAGAATGGTTTGCTTATGACTGCAGCGACTCGGGGCG ATGGAACAACGGGTGAAAATATCACAGAAAATGTGAAACGGATCAAAGATGTTCCTTTAAAGCTTAAAGAAGCAATTGAT ATTGTGGTACGTGGTGAAGCTTATCTTCCACGTAAGAATTTTGCTAAACTGAACAAAGAGCGTGAACTTGAAGGAGCAAC TCCTTTTGCTAATCCAAGAAATGCGGCAGCTGGAACTTTACGTCAACTTGATACAAAAATAGTTGCCAAACGTGGTCTTG CAACTTTCCTTTATCAAGAAGCAAGTCCAGCAACCAATGACACTCAAGAAGAAGTCTTAGAATATTTTGAAGAACTTGGT TTCCAAGTCAATCCTGAACGTAAATTTGCTCGAAATATGGATGAAATTTGGGAATTTATTGAAGAGGCTACCCGTCTGCG TGACGAACTCCCCTATGACATTGACGGGGTTGTTGTAAAAGTTAATAATCTTGCTGAGCAGGAGGAATTAGGTTTTACGG TTAAGGCACCGCGCTGGGCGATTGCTTACAAATTTCCAGCTGAACAAGCAGAAACAGAAATTTTGTCTGTTGACTGGACT GTCGGTCGGACAGGAGTTGTCACCCCAACAGCAAATATGACCCCGGTTCTTTTAGCACAGACAACGGTTGCTCGAGCAAC TTTGCACAATGTGGACTATATTGAAGAAAAAGATATCCGTATTGGTGATCATGTCTTGATTTATAAGGCAGGGGATATTA TTCCGAAGGTTGGGAAAGTACTTTTGGACAAACGCCCAGAAGGTCTTGAAGGCTTAGAAATTCCAACGAAATGTCCAGAG TGTGGTTCGGAGTTAATTCATTTTGAAGATGAAGTGGCTTTACGCTGTGTTAACCCCTTATGTCCGGCGCAAATTCGGGA AAAACTAATTCATTTTGCTAGTCGTGATGCTATGAATATTGTGGGCTTAGGCCCGTCAGTCATTTCACAACTTTTTGATA AAAAATTGGTGGCTGATGTTGCTGATTTATATCAATTGACGATTGAAGATTTACTGACATTAGATAAGGTCAAAGAAACA TTGGCTCAAAAAATTGTGTCAGCAATTGCGCAGAGTCGTGAAAATTCGGCGGAAAAATTATTATTTGGTTTAGGAATTCG TCATGTTGGTGGTAAAGCGGCTAAATTACTTTTGGAACGTTTTGCTAATCTTCGAGCGCTTTCTAAAGCAACAGAAGAAG AAATTTCTGAAATTCCATCTTTAGGTGGGGTCATTGCTACGGCTGTCGTTTCTTATTTTGAAACTGACGGAGCAAAAATT TTACTGGATGAACTTGAAAATGCTGGTGTAAATTTTGATTATTTAGGGGCTGTTAATATTGAAGGAATATTATCAGGTAA GACAGTTGTCTTAACTGGTAAATTGACGACTTTGAAGCGCTCAGAAGCAAAAGAAAAATTGGAAGCGTTGGGAGCAAATG TTTCTGGTTCTGTTTCTAAGAAAACTGATTTGGTAGTCGCCGGAGAAGAAGCAGGTAGCAAACTGACAAAAGCTCAAGAC TTAGGAATTGAAATCTGGTCAGAGCAAGATTTGCTTGATTTATAA
Upstream 100 bases:
>100_bases TTTTTTTGTTTTAAATTACATCATTTTTTTAATAGAAATTTGCCTTTTTGATGTGCTTCGGTAATCATAATGACTGGTCT TTTGTGTTAAAATAGGAGCT
Downstream 100 bases:
>100_bases ACTAATTTGTATTGAATATTACTGACAGACTTTAGTGAGAGCGTAAATTTACTGACAGAAATTTGAACTTTGGTTCAATT GGTGGGGTCACTCTTTTGGG
Product: NAD-dependent DNA ligase LigA
Products: NA
Alternate protein names: Polydeoxyribonucleotide synthase [NAD+]
Number of amino acids: Translated: 654; Mature: 654
Protein sequence:
>654_residues MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHRTGGVILDGFVKFRHPYNLYS LGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAID IVVRGEAYLPRKNFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWT VGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIEEKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE CGSELIHFEDEVALRCVNPLCPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYFETDGAKI LLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQD LGIEIWSEQDLLDL
Sequences:
>Translated_654_residues MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHRTGGVILDGFVKFRHPYNLYS LGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAID IVVRGEAYLPRKNFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWT VGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIEEKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE CGSELIHFEDEVALRCVNPLCPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYFETDGAKI LLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQD LGIEIWSEQDLLDL >Mature_654_residues MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHRTGGVILDGFVKFRHPYNLYS LGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAID IVVRGEAYLPRKNFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWT VGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIEEKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE CGSELIHFEDEVALRCVNPLCPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYFETDGAKI LLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQD LGIEIWSEQDLLDL
Specific function: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of dam
COG id: COG0272
COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 BRCT domain
Homologues:
Organism=Escherichia coli, GI1788750, Length=666, Percent_Identity=44.7447447447448, Blast_Score=552, Evalue=1e-158, Organism=Escherichia coli, GI87082305, Length=568, Percent_Identity=22.887323943662, Blast_Score=117, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DNLJ_LACLA (Q9CIE4)
Other databases:
- EMBL: AE005176 - PIR: C86677 - RefSeq: NP_266575.1 - HSSP: O87703 - ProteinModelPortal: Q9CIE4 - GeneID: 1114031 - GenomeReviews: AE005176_GR - KEGG: lla:L0304 - NMPDR: fig|272623.1.peg.428 - HOGENOM: HBG620317 - OMA: IKHFASR - ProtClustDB: PRK07956 - BioCyc: LLAC272623:L0304-MONOMER - BRENDA: 6.5.1.2 - GO: GO:0005622 - HAMAP: MF_01588 - InterPro: IPR001357 - InterPro: IPR018239 - InterPro: IPR004150 - InterPro: IPR001679 - InterPro: IPR013839 - InterPro: IPR013840 - InterPro: IPR003583 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR010994 - InterPro: IPR004149 - Gene3D: G3DSA:2.40.50.140 - PIRSF: PIRSF001604 - SMART: SM00292 - SMART: SM00278 - SMART: SM00532 - TIGRFAMs: TIGR00575
Pfam domain/function: PF00533 BRCT; PF01653 DNA_ligase_aden; PF03120 DNA_ligase_OB; PF03119 DNA_ligase_ZBD; SSF52113 BRCT; SSF50249 Nucleic_acid_OB; SSF47781 RuvA_2_like
EC number: =6.5.1.2
Molecular weight: Translated: 72739; Mature: 72739
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS50172 BRCT; PS01055 DNA_LIGASE_N1; PS01056 DNA_LIGASE_N2
Important sites: ACT_SITE 111-111 BINDING 109-109 BINDING 132-132 BINDING 166-166 BINDING 280-280 BINDING 304-304
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHR CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC TGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLY CCCEEEECHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEE YENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAIDIVVRGEAYLPRKNFAKLNKE EECCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHEEEEEECCCCCCCHHHHHCCCH RELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWA CEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCEEEECCCEE IAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIEEKDIR EEEECCCHHHCCEEEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCE IGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPECGSELIHFEDEVALRCVNPL ECCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCC CPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET CHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISEIPS HHHHHHHHHHHHCCCHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LGGVIATAVVSYFETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKR CCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCEEEEECEEECEEECCCEEEEECCCHHHHH SEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL HHHHHHHHHHCCCCCCCCCCCCEEEEECCHHCCHHHHHHHCCEEEECCCCCCCC >Mature Secondary Structure MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHR CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC TGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLY CCCEEEECHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEE YENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAIDIVVRGEAYLPRKNFAKLNKE EECCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHEEEEEECCCCCCCHHHHHCCCH RELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWA CEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCEEEECCCEE IAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIEEKDIR EEEECCCHHHCCEEEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCE IGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPECGSELIHFEDEVALRCVNPL ECCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCC CPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET CHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISEIPS HHHHHHHHHHHHCCCHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LGGVIATAVVSYFETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKR CCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCEEEEECEEECEEECCCEEEEECCCHHHHH SEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL HHHHHHHHHHCCCCCCCCCCCCEEEEECCHHCCHHHHHHHCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11337471