Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is llrC
Identifier: 15672379
GI number: 15672379
Start: 402989
End: 403690
Strand: Reverse
Name: llrC
Synonym: L0125
Alternate gene names: 15672379
Gene position: 403690-402989 (Counterclockwise)
Preceding gene: 15672385
Following gene: 15672378
Centisome position: 17.07
GC content: 38.6
Gene sequence:
>702_bases ATGAAAAAAATTCTTGTTGTTGATGATGAAAAACCAATCTCAGATATCGTAAAATTTAATTTAACCAAAGAAGGTTTTGA AGTCTTTACAGCTTTTGATGGTGAAGAAGCTCTTGAAGCATTTAAAGAAGTACAACCTGACCTTATTCTGCTTGATTTGA TGTTACCTAAACTTGATGGTCTTGATGTTGCACGTGAAATCCGTAAAACTTCTGACACTCCAATTATTATGGTGTCAGCT AAAGATAGTGAATTTGACAAAGTAATTGGTCTTGAACTTGGTGCTGATGATTATGTCACAAAACCATTCTCAAACCGTGA ACTATTAGCTCGTATTAAAGCAAACTTGCGTCGTATCAATGTCGCACCTGCTGAATCTACTGACAATGTCAAGAAAGAAT TGATTATCGGAAACCTCCGTATCAATCCAGCACACTATGCGGCTTATAAAAATGATAAACAACTCGACCTTACACACCGT GAGTTTGAATTGCTTTACTACCTTGCTCAACACCTTGGCGAAGTGATCACTCGTGAAAACCTTTTGGAAACCGTTTGGGG TTATGACTACTTTGGAGATGTTCGTACAGTTGACGTTACTGTTCGTCGTTTACGTGAAAAAGTTGAAGATACTCCAAGCC GTCCACAATACGTTTCAACACGCCGCGGGGTTGGCTACTACATGAGCAACCCACATGATTAA
Upstream 100 bases:
>100_bases TAAAAATTGTATAATATAACTGAAACAGCTTACTTGATTTGTTAATTCAAATAAATACGAGTAACATTCAATAAAAAATT TTCCACTTGAAAGGACAACT
Downstream 100 bases:
>100_bases ATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAGTTTTGATT ACAATTTTGCTCATTTAAGT
Product: two-component system regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLDVAREIRKTSDTPIIMVSA KDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINVAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHR EFELLYYLAQHLGEVITRENLLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNPHD
Sequences:
>Translated_233_residues MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLDVAREIRKTSDTPIIMVSA KDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINVAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHR EFELLYYLAQHLGEVITRENLLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNPHD >Mature_233_residues MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLDVAREIRKTSDTPIIMVSA KDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINVAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHR EFELLYYLAQHLGEVITRENLLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNPHD
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter seque
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=44.1048034934498, Blast_Score=171, Evalue=5e-44, Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=40.0862068965517, Blast_Score=167, Evalue=5e-43, Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=39.9122807017544, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=36.6071428571429, Blast_Score=153, Evalue=9e-39, Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=39.5555555555556, Blast_Score=150, Evalue=8e-38, Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=35.6521739130435, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=34.9557522123894, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=35.3982300884956, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI145693140, Length=244, Percent_Identity=30.327868852459, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1790860, Length=232, Percent_Identity=34.051724137931, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=33.4782608695652, Blast_Score=124, Evalue=5e-30, Organism=Escherichia coli, GI1789402, Length=228, Percent_Identity=33.7719298245614, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=35.6521739130435, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787375, Length=234, Percent_Identity=32.4786324786325, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=35.7798165137615, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787487, Length=102, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 26766; Mature: 26766
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG CCEEEEECCCCCHHHHHHHCCCHHCEEEEEECCCHHHHHHHHHCCCCEEEEEHHHCCCCC LDVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRIN HHHHHHHHHCCCCCEEEEECCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEE VAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITREN CCCCCCCCHHHHHHEEECEEECCHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH LLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNPHD HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG CCEEEEECCCCCHHHHHHHCCCHHCEEEEEECCCHHHHHHHHHCCCCEEEEEHHHCCCCC LDVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRIN HHHHHHHHHCCCCCEEEEECCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEE VAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITREN CCCCCCCCHHHHHHEEECEEECCHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH LLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNPHD HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 9829949; 10878122 [H]