Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is lysS
Identifier: 15672355
GI number: 15672355
Start: 375784
End: 377268
Strand: Reverse
Name: lysS
Synonym: L0347
Alternate gene names: 15672355
Gene position: 377268-375784 (Counterclockwise)
Preceding gene: 15672356
Following gene: 15672347
Centisome position: 15.95
GC content: 38.86
Gene sequence:
>1485_bases TTGGCTGAAATCGAAGAACTTAATGACCAAATGAAAGTCCGCCGTGAAAAAATGGAAAACCTGCGCGAAGCGGGAATTGA CCCATTTGGACATAAATTTACACGTACGCACAACTCACAAGAACTACACGAAGCTTATGACGAAAAGACGAAAGAAGAAT TGCATGAACTTGCGCTTTCAGGAATTGTCGCTGGTCGTTTGATGACTAAACGTGGTAAAGGTAAAGTCGGTTTCGCCCAT CTTCAAGACCGCGAAGGCCAAATTCAACTTTATGTTCGTAAAGATGAAGTCGGCGAAGAAAATTATGAAATTTTCAAAAA AGCTGACCTCGGAGATTTCCTTGGTGTTGAAGGCGAAATCATGAAAACTGACATGGGTGAATTGTCAATTAAAGCAAAAA AATTGACTTTCCTCTCAAAAGCGCTTCGTCCTTTGCCTGAAAAATTCCATGGTTTGACTGACACTGAAACACGTTATCGT AAACGTTATTTGGATTTGATTTCAAATAAAGAAAGCTTCAATCGTTTTGTCACTCGTTCTAAAATTATCAGTGAAATCCG TCGTTATATGGATGGTCGTGGATATCTTGAAGTTGAAACTCCAGTACTTAACAATGAAGCCGGTGGTGCTGCTGCTCGTC CATTCTACACACATCATAACAGTCTTGATATTGATATGGCGCTTCGTATTGCAACTGAATTACACTTGAAACGTTTGATT GTTGGTGGAATGGAAAAAGTTTATGAACTTGGCCGTGTCTTCCGTAACGAAGGAATGGATATGACTCATAATCCAGAATT CACAACAATGGAATCTTATGAAGCTTATGCTGATTTTGAAGATATCATGGATTTGACAGAAGGAATCTTCCAACATGTTG CTAAAACAGTGGTTGGTCAAGATGTTCTTGAATACGATGGTAAAGAAATTAATGTTGGCGGAAAATTCAAACGTGTTCAC ATGGTTGATGCCATCAAGGAAGTTGCTGGAGTTGATTTCTGGCCTGAGATGACTTTTGAAGAAGCAACAGCTCTTGCAAA AGAACATGATATTCATGTTGAAAAACATTTCACTTCTGTTGGTCATATCATTAACGAATTCTTTGAAAAATATGTTGAAG AAACTTTGATTCAACCTACTTTCGTTTTTGGTCATCCAAAAGAAATTTCACCACTTGCTAAAATGAATGAAAAAGACCCA CGTTTTACTGACCGTTTTGAACTTTTCATCAACGGTAAAGAATACGCCAATGCTTTCAGCGAATTGAATGACCCAATTGA CCAATTGGAACGTTTTGAAGCTCAAGCTAAAGCTAAAGAACTTGGAGATGATGAAGCAACTGGTGTCGATTACGATTATG TTGAAGCACTCGAACACGGTATGCCACCAACAGGTGGACTCGGTATCGGGATTGATCGCTTAGTGATGCTCTTTACTGGC ACAACTTCAATCCGTGACGTTTTGCTTTTCCCAACTATGAAATAA
Upstream 100 bases:
>100_bases TCAAGCCTATGCTTAAAGCGTTTACTGACAAAAAAATTTCTGTTAATTTTTTGAAAATATGTTAAAATAGAGAGAATAAA AAATTACAAGGAGTACTATT
Downstream 100 bases:
>100_bases AAAATAAAAACCGCTTTTTGATGTGCACCCCAAAAGTTAGACTTTTTATCCAAGCAGAAATACTTGGATTTTTTTAATTG TTTTGGTAATTCAAGCGAAA
Product: lysyl-tRNA synthetase
Products: NA
Alternate protein names: Lysine--tRNA ligase; LysRS
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MAEIEELNDQMKVRREKMENLREAGIDPFGHKFTRTHNSQELHEAYDEKTKEELHELALSGIVAGRLMTKRGKGKVGFAH LQDREGQIQLYVRKDEVGEENYEIFKKADLGDFLGVEGEIMKTDMGELSIKAKKLTFLSKALRPLPEKFHGLTDTETRYR KRYLDLISNKESFNRFVTRSKIISEIRRYMDGRGYLEVETPVLNNEAGGAAARPFYTHHNSLDIDMALRIATELHLKRLI VGGMEKVYELGRVFRNEGMDMTHNPEFTTMESYEAYADFEDIMDLTEGIFQHVAKTVVGQDVLEYDGKEINVGGKFKRVH MVDAIKEVAGVDFWPEMTFEEATALAKEHDIHVEKHFTSVGHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDP RFTDRFELFINGKEYANAFSELNDPIDQLERFEAQAKAKELGDDEATGVDYDYVEALEHGMPPTGGLGIGIDRLVMLFTG TTSIRDVLLFPTMK
Sequences:
>Translated_494_residues MAEIEELNDQMKVRREKMENLREAGIDPFGHKFTRTHNSQELHEAYDEKTKEELHELALSGIVAGRLMTKRGKGKVGFAH LQDREGQIQLYVRKDEVGEENYEIFKKADLGDFLGVEGEIMKTDMGELSIKAKKLTFLSKALRPLPEKFHGLTDTETRYR KRYLDLISNKESFNRFVTRSKIISEIRRYMDGRGYLEVETPVLNNEAGGAAARPFYTHHNSLDIDMALRIATELHLKRLI VGGMEKVYELGRVFRNEGMDMTHNPEFTTMESYEAYADFEDIMDLTEGIFQHVAKTVVGQDVLEYDGKEINVGGKFKRVH MVDAIKEVAGVDFWPEMTFEEATALAKEHDIHVEKHFTSVGHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDP RFTDRFELFINGKEYANAFSELNDPIDQLERFEAQAKAKELGDDEATGVDYDYVEALEHGMPPTGGLGIGIDRLVMLFTG TTSIRDVLLFPTMK >Mature_493_residues AEIEELNDQMKVRREKMENLREAGIDPFGHKFTRTHNSQELHEAYDEKTKEELHELALSGIVAGRLMTKRGKGKVGFAHL QDREGQIQLYVRKDEVGEENYEIFKKADLGDFLGVEGEIMKTDMGELSIKAKKLTFLSKALRPLPEKFHGLTDTETRYRK RYLDLISNKESFNRFVTRSKIISEIRRYMDGRGYLEVETPVLNNEAGGAAARPFYTHHNSLDIDMALRIATELHLKRLIV GGMEKVYELGRVFRNEGMDMTHNPEFTTMESYEAYADFEDIMDLTEGIFQHVAKTVVGQDVLEYDGKEINVGGKFKRVHM VDAIKEVAGVDFWPEMTFEEATALAKEHDIHVEKHFTSVGHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDPR FTDRFELFINGKEYANAFSELNDPIDQLERFEAQAKAKELGDDEATGVDYDYVEALEHGMPPTGGLGIGIDRLVMLFTGT TSIRDVLLFPTMK
Specific function: Unknown
COG id: COG1190
COG function: function code J; Lysyl-tRNA synthetase (class II)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI194272210, Length=503, Percent_Identity=41.7495029821074, Blast_Score=375, Evalue=1e-104, Organism=Homo sapiens, GI5031815, Length=503, Percent_Identity=41.7495029821074, Blast_Score=375, Evalue=1e-104, Organism=Homo sapiens, GI45439306, Length=458, Percent_Identity=21.8340611353712, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI40789249, Length=279, Percent_Identity=25.8064516129032, Blast_Score=81, Evalue=3e-15, Organism=Escherichia coli, GI1789256, Length=498, Percent_Identity=53.8152610441767, Blast_Score=523, Evalue=1e-150, Organism=Escherichia coli, GI1790571, Length=496, Percent_Identity=52.0161290322581, Blast_Score=506, Evalue=1e-145, Organism=Escherichia coli, GI87082379, Length=331, Percent_Identity=30.8157099697885, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1788173, Length=254, Percent_Identity=27.5590551181102, Blast_Score=91, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17535927, Length=502, Percent_Identity=43.6254980079681, Blast_Score=395, Evalue=1e-110, Organism=Caenorhabditis elegans, GI17535925, Length=502, Percent_Identity=43.6254980079681, Blast_Score=395, Evalue=1e-110, Organism=Caenorhabditis elegans, GI71994340, Length=501, Percent_Identity=43.7125748502994, Blast_Score=394, Evalue=1e-110, Organism=Caenorhabditis elegans, GI32566633, Length=173, Percent_Identity=28.3236994219653, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6320242, Length=506, Percent_Identity=44.4664031620553, Blast_Score=398, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6324256, Length=514, Percent_Identity=33.4630350194552, Blast_Score=231, Evalue=3e-61, Organism=Saccharomyces cerevisiae, GI6323011, Length=464, Percent_Identity=23.7068965517241, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24640851, Length=514, Percent_Identity=42.6070038910506, Blast_Score=387, Evalue=1e-107, Organism=Drosophila melanogaster, GI24640849, Length=514, Percent_Identity=42.6070038910506, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI17136276, Length=465, Percent_Identity=23.6559139784946, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24584738, Length=280, Percent_Identity=26.7857142857143, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: 1200 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYK_LACLA (Q9CII7)
Other databases:
- EMBL: AE005176 - PIR: E86671 - RefSeq: NP_266529.1 - ProteinModelPortal: Q9CII7 - SMR: Q9CII7 - GeneID: 1113984 - GenomeReviews: AE005176_GR - KEGG: lla:L0347 - NMPDR: fig|272623.1.peg.381 - HOGENOM: HBG631383 - OMA: RNEGMDH - ProtClustDB: PRK00484 - BioCyc: LLAC272623:L0347-MONOMER - BRENDA: 6.1.1.6 - GO: GO:0005737 - HAMAP: MF_00252 - InterPro: IPR004364 - InterPro: IPR018150 - InterPro: IPR006195 - InterPro: IPR002313 - InterPro: IPR018149 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004365 - Gene3D: G3DSA:2.40.50.140 - PANTHER: PTHR22594 - PANTHER: PTHR22594:SF4 - PRINTS: PR00982 - TIGRFAMs: TIGR00499
Pfam domain/function: PF00152 tRNA-synt_2; PF01336 tRNA_anti; SSF50249 Nucleic_acid_OB
EC number: =6.1.1.6
Molecular weight: Translated: 56616; Mature: 56485
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEIEELNDQMKVRREKMENLREAGIDPFGHKFTRTHNSQELHEAYDEKTKEELHELALS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH GIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDEVGEENYEIFKKADLGDFLGVEGEI HHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCHHHCCCCCEE MKTDMGELSIKAKKLTFLSKALRPLPEKFHGLTDTETRYRKRYLDLISNKESFNRFVTRS EECCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH KIISEIRRYMDGRGYLEVETPVLNNEAGGAAARPFYTHHNSLDIDMALRIATELHLKRLI HHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH VGGMEKVYELGRVFRNEGMDMTHNPEFTTMESYEAYADFEDIMDLTEGIFQHVAKTVVGQ HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH DVLEYDGKEINVGGKFKRVHMVDAIKEVAGVDFWPEMTFEEATALAKEHDIHVEKHFTSV HHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH GHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDPRFTDRFELFINGKEYANAFS HHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEEECCHHHHHHHH ELNDPIDQLERFEAQAKAKELGDDEATGVDYDYVEALEHGMPPTGGLGIGIDRLVMLFTG HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC TTSIRDVLLFPTMK CHHHHHHHCCCCCC >Mature Secondary Structure AEIEELNDQMKVRREKMENLREAGIDPFGHKFTRTHNSQELHEAYDEKTKEELHELALS CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH GIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDEVGEENYEIFKKADLGDFLGVEGEI HHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCHHHCCCCCEE MKTDMGELSIKAKKLTFLSKALRPLPEKFHGLTDTETRYRKRYLDLISNKESFNRFVTRS EECCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH KIISEIRRYMDGRGYLEVETPVLNNEAGGAAARPFYTHHNSLDIDMALRIATELHLKRLI HHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH VGGMEKVYELGRVFRNEGMDMTHNPEFTTMESYEAYADFEDIMDLTEGIFQHVAKTVVGQ HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH DVLEYDGKEINVGGKFKRVHMVDAIKEVAGVDFWPEMTFEEATALAKEHDIHVEKHFTSV HHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH GHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDPRFTDRFELFINGKEYANAFS HHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEEECCHHHHHHHH ELNDPIDQLERFEAQAKAKELGDDEATGVDYDYVEALEHGMPPTGGLGIGIDRLVMLFTG HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC TTSIRDVLLFPTMK CHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11337471