Click here to switch to the map view.

The map label for this gene is ydcC

Identifier: 15672305

GI number: 15672305

Start: 322409

End: 323104

Strand: Direct

Name: ydcC

Synonym: L122401

Alternate gene names: 15672305

Gene position: 322409-323104 (Clockwise)

Preceding gene: 15672304

Following gene: 15672306

Centisome position: 13.63

GC content: 39.66

Gene sequence:

>696_bases
ATGGCAGAATGGTTTGCACATACATTTCCTAATGTGGTTTATTTAGGATGGTCAGGTGAGACGGGTTGGTGGACAGCAAT
TGTTCAAACGCTTTATATGACATTTATTTCAGCACTTATTGGTGGTTTATTGGGATTGATATTTGGAATTGGTGTTGTGG
TGACTGCTGAAGATGGAATTACACCTAATCGACCATTATTTTGGATTTTAGATAAAATTGTTTCTATCGGACGGGCTTTT
CCCTTTATTATCTTATTAGCAGCAATTGCTCCCTTGACTAAAATTTTGGTGGGGACACAGATTGGTGTTACTGCGGCTTT
AGTTCCATTGGCTCTAGGAGTGGCTCCTTTTTATGCCAGACAAGTTCAAGCTTCGCTTGAGTCTGTTGACCATGGAAAAG
TTGAAGCAGCTCAAACGGTGGGAGCTGATTTTCTCGATATTGTTTTCACGGTCTATCTTCGTGAAGAATTAGCTAGTTTA
ATTCGTGTTTCAACCGTTACTTTAATTTCCTTGATTGGTTTGACTGCAATGGCTGGTGCGATTGGAGCTGGTGGACTAGG
AAATACGGCCATTTCTTATGGATATAATCGCTTTGCCAATGATGTTACTTGGTTTGCAACCATTTTAATCTTGATTTTTG
TTTTATTGGTTCAGCTTGTTGGGGATTTCTTAGCTAGACGGGTTTCACATCGATAA

Upstream 100 bases:

>100_bases
TAAAAGGTTCAAGTGAACATCGGGCTGCCGCAAAGGCATATTTTGTTGAAAGACATTTAAAATTTGAAGTTTTAGGTAAA
ATTGAAAGGACGGTAGACTA

Downstream 100 bases:

>100_bases
TTTATCAAATAATTTTAGATAAAAATATTTTATAAAAAGGAGAAACAATGAAAAATAACTCTGTAAAAATTGTTGTTGCC
ACTGGGATTGGGGCTGCTTT

Product: amino acid ABC trasporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MAEWFAHTFPNVVYLGWSGETGWWTAIVQTLYMTFISALIGGLLGLIFGIGVVVTAEDGITPNRPLFWILDKIVSIGRAF
PFIILLAAIAPLTKILVGTQIGVTAALVPLALGVAPFYARQVQASLESVDHGKVEAAQTVGADFLDIVFTVYLREELASL
IRVSTVTLISLIGLTAMAGAIGAGGLGNTAISYGYNRFANDVTWFATILILIFVLLVQLVGDFLARRVSHR

Sequences:

>Translated_231_residues
MAEWFAHTFPNVVYLGWSGETGWWTAIVQTLYMTFISALIGGLLGLIFGIGVVVTAEDGITPNRPLFWILDKIVSIGRAF
PFIILLAAIAPLTKILVGTQIGVTAALVPLALGVAPFYARQVQASLESVDHGKVEAAQTVGADFLDIVFTVYLREELASL
IRVSTVTLISLIGLTAMAGAIGAGGLGNTAISYGYNRFANDVTWFATILILIFVLLVQLVGDFLARRVSHR
>Mature_230_residues
AEWFAHTFPNVVYLGWSGETGWWTAIVQTLYMTFISALIGGLLGLIFGIGVVVTAEDGITPNRPLFWILDKIVSIGRAFP
FIILLAAIAPLTKILVGTQIGVTAALVPLALGVAPFYARQVQASLESVDHGKVEAAQTVGADFLDIVFTVYLREELASLI
RVSTVTLISLIGLTAMAGAIGAGGLGNTAISYGYNRFANDVTWFATILILIFVLLVQLVGDFLARRVSHR

Specific function: Part of the binding-protein-dependent transport system for D-methionine. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG2011

COG function: function code P; ABC-type metal ion transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1786397, Length=215, Percent_Identity=40.9302325581395, Blast_Score=113, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24798; Mature: 24666

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEWFAHTFPNVVYLGWSGETGWWTAIVQTLYMTFISALIGGLLGLIFGIGVVVTAEDGI
CCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
TPNRPLFWILDKIVSIGRAFPFIILLAAIAPLTKILVGTQIGVTAALVPLALGVAPFYAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVQASLESVDHGKVEAAQTVGADFLDIVFTVYLREELASLIRVSTVTLISLIGLTAMAGA
HHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGAGGLGNTAISYGYNRFANDVTWFATILILIFVLLVQLVGDFLARRVSHR
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEWFAHTFPNVVYLGWSGETGWWTAIVQTLYMTFISALIGGLLGLIFGIGVVVTAEDGI
CCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
TPNRPLFWILDKIVSIGRAFPFIILLAAIAPLTKILVGTQIGVTAALVPLALGVAPFYAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVQASLESVDHGKVEAAQTVGADFLDIVFTVYLREELASLIRVSTVTLISLIGLTAMAGA
HHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGAGGLGNTAISYGYNRFANDVTWFATILILIFVLLVQLVGDFLARRVSHR
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]