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The map label for this gene is ycfD

Identifier: 15672238

GI number: 15672238

Start: 252684

End: 253853

Strand: Direct

Name: ycfD

Synonym: L52686

Alternate gene names: 15672238

Gene position: 252684-253853 (Clockwise)

Preceding gene: 15672237

Following gene: 15672239

Centisome position: 10.68

GC content: 35.64

Gene sequence:

>1170_bases
ATGAAAAAAATTACAGTACGGACAAAAGCAGCAAAGAAATTGCGGGCTGGCTATCCACTTTTGGTGGCAGAAGATTTAAA
TTCACCTTTCTTGGAGGATGATTTTGCACAATTTTTTGATGAAAAAGGGCAAGCGCTTGGAACAGGTTATCTTTCAAAAC
AAAATAAAGGAGTGGGTTGGCTTTTAGATTCTTCGTCAGTAAAAATTGACCATCATTTTTATGTGGAAAAATTTGTCAAT
GCACGCGCTTTACGGGCGAACTTCTATCAGGATGAATTAACGAACGCCTTTCGTCTTTTTAATGGTGAAGGAGATGGATT
AGGCGGCTTAACCATTGATTTTTATAATGGTTTTGCAGTCTTTTCTTGGTACAATCAATTTATATATAGTCAAAAAAAAG
CGATTGTTAAGGCTTTTCAAGTCGTGTTCCCAGATATTAAAGGGGCTTATGAAAAACTTCGTTTTTCTGAGGCTGCTTTA
GAAAGTCAACATATTTTTGGCCAAGAAGCGGCTGAACCTTTGTTGGTCATGGAAAATGGCGTGACTTATGCGACTTATCT
AAATGAAGGATTAATGACAGGGATTTTTCTTGACCAAAAAAATGTTCGCGGGGCACTTGCGGGCGGTCTTTCAACTGGTA
AAACTTTACTAAATATGTTTAGTTATACAGGCGCTTTTTCAGTTGCAGCAGCTTTTGGAGGGAGCAGTCAAACAACGTCA
GTCGATTTGGCGAAACGTTCGCTTGATAAAACGAGAGAACAATTTTTGGTCAATGGAATTGAACCAGAGAGTCAAAAAAT
CTATGTGATGGATGTTTTTGGTTATTTTAATTATGCTAAGAAAAAAGAATTGACTTATGACATGATTGTCCTCGACCCTC
CTTCATTTGCCAGAAATGGTAAAAAAACATTCTCAGTAGCTAAAAATTATGGCGACCTTGTTAAAGAAGCTGTTGAAATT
TTAGAAAATAATGGGACATTAATTGCATCAACAAATGCAGCAAATGTTTCTGATAAAAAATTCCGTCAAATGATTGAAGA
AGCGCTCAAAAATAAGGGAGTAAAATTTACCGTTTTCCAAGAAGAAAAATTACCAGCTGATTTTCATATTGCTGACAGCT
TTCCAGAAGGAAATTATCTTAAAGTATTATTTATTAAAATCAAAAAATAG

Upstream 100 bases:

>100_bases
TAAAAATATGCTTTTGATTGTATAACTACTGGATAGTCTATCTGGTGGTTATTTTGGTTTTTAAAAGAAAAAGAAAGTAC
TTTTTTGTTATAATTAAAGC

Downstream 100 bases:

>100_bases
TCTGTCATTACTGACAGATTTTTTGTCAGTAAAAATTTTACTGACAGAAATAATGATTAATTACAAATGTGAGCGCTTTA
CTATCTGCTTTCTATATGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKKITVRTKAAKKLRAGYPLLVAEDLNSPFLEDDFAQFFDEKGQALGTGYLSKQNKGVGWLLDSSSVKIDHHFYVEKFVN
ARALRANFYQDELTNAFRLFNGEGDGLGGLTIDFYNGFAVFSWYNQFIYSQKKAIVKAFQVVFPDIKGAYEKLRFSEAAL
ESQHIFGQEAAEPLLVMENGVTYATYLNEGLMTGIFLDQKNVRGALAGGLSTGKTLLNMFSYTGAFSVAAAFGGSSQTTS
VDLAKRSLDKTREQFLVNGIEPESQKIYVMDVFGYFNYAKKKELTYDMIVLDPPSFARNGKKTFSVAKNYGDLVKEAVEI
LENNGTLIASTNAANVSDKKFRQMIEEALKNKGVKFTVFQEEKLPADFHIADSFPEGNYLKVLFIKIKK

Sequences:

>Translated_389_residues
MKKITVRTKAAKKLRAGYPLLVAEDLNSPFLEDDFAQFFDEKGQALGTGYLSKQNKGVGWLLDSSSVKIDHHFYVEKFVN
ARALRANFYQDELTNAFRLFNGEGDGLGGLTIDFYNGFAVFSWYNQFIYSQKKAIVKAFQVVFPDIKGAYEKLRFSEAAL
ESQHIFGQEAAEPLLVMENGVTYATYLNEGLMTGIFLDQKNVRGALAGGLSTGKTLLNMFSYTGAFSVAAAFGGSSQTTS
VDLAKRSLDKTREQFLVNGIEPESQKIYVMDVFGYFNYAKKKELTYDMIVLDPPSFARNGKKTFSVAKNYGDLVKEAVEI
LENNGTLIASTNAANVSDKKFRQMIEEALKNKGVKFTVFQEEKLPADFHIADSFPEGNYLKVLFIKIKK
>Mature_389_residues
MKKITVRTKAAKKLRAGYPLLVAEDLNSPFLEDDFAQFFDEKGQALGTGYLSKQNKGVGWLLDSSSVKIDHHFYVEKFVN
ARALRANFYQDELTNAFRLFNGEGDGLGGLTIDFYNGFAVFSWYNQFIYSQKKAIVKAFQVVFPDIKGAYEKLRFSEAAL
ESQHIFGQEAAEPLLVMENGVTYATYLNEGLMTGIFLDQKNVRGALAGGLSTGKTLLNMFSYTGAFSVAAAFGGSSQTTS
VDLAKRSLDKTREQFLVNGIEPESQKIYVMDVFGYFNYAKKKELTYDMIVLDPPSFARNGKKTFSVAKNYGDLVKEAVEI
LENNGTLIASTNAANVSDKKFRQMIEEALKNKGVKFTVFQEEKLPADFHIADSFPEGNYLKVLFIKIKK

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=351, Percent_Identity=28.7749287749288, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1787181, Length=203, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: NA

Molecular weight: Translated: 43490; Mature: 43490

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITVRTKAAKKLRAGYPLLVAEDLNSPFLEDDFAQFFDEKGQALGTGYLSKQNKGVGW
CCEEEEHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEE
LLDSSSVKIDHHFYVEKFVNARALRANFYQDELTNAFRLFNGEGDGLGGLTIDFYNGFAV
EEECCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCHH
FSWYNQFIYSQKKAIVKAFQVVFPDIKGAYEKLRFSEAALESQHIFGQEAAEPLLVMENG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECC
VTYATYLNEGLMTGIFLDQKNVRGALAGGLSTGKTLLNMFSYTGAFSVAAAFGGSSQTTS
CEEEEECCCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCH
VDLAKRSLDKTREQFLVNGIEPESQKIYVMDVFGYFNYAKKKELTYDMIVLDPPSFARNG
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCHHHCCCCEEEEEEECCCHHHCCC
KKTFSVAKNYGDLVKEAVEILENNGTLIASTNAANVSDKKFRQMIEEALKNKGVKFTVFQ
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
EEKLPADFHIADSFPEGNYLKVLFIKIKK
CCCCCCCEEEECCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKKITVRTKAAKKLRAGYPLLVAEDLNSPFLEDDFAQFFDEKGQALGTGYLSKQNKGVGW
CCEEEEHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEE
LLDSSSVKIDHHFYVEKFVNARALRANFYQDELTNAFRLFNGEGDGLGGLTIDFYNGFAV
EEECCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCHH
FSWYNQFIYSQKKAIVKAFQVVFPDIKGAYEKLRFSEAALESQHIFGQEAAEPLLVMENG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECC
VTYATYLNEGLMTGIFLDQKNVRGALAGGLSTGKTLLNMFSYTGAFSVAAAFGGSSQTTS
CEEEEECCCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCH
VDLAKRSLDKTREQFLVNGIEPESQKIYVMDVFGYFNYAKKKELTYDMIVLDPPSFARNG
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCHHHCCCCEEEEEEECCCHHHCCC
KKTFSVAKNYGDLVKEAVEILENNGTLIASTNAANVSDKKFRQMIEEALKNKGVKFTVFQ
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
EEKLPADFHIADSFPEGNYLKVLFIKIKK
CCCCCCCEEEECCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]