Click here to switch to the map view.

The map label for this gene is ycfC

Identifier: 15672237

GI number: 15672237

Start: 251444

End: 252586

Strand: Direct

Name: ycfC

Synonym: L51437

Alternate gene names: 15672237

Gene position: 251444-252586 (Clockwise)

Preceding gene: 15672236

Following gene: 15672238

Centisome position: 10.63

GC content: 36.75

Gene sequence:

>1143_bases
ATGAGAACACTTGCTATCTTTAAACGAATTATGCTTCAACGGCGTGGTGACCCTAGGACGCTGGCAATGATGTTTTTAGC
TCCAATATTTATTTTGACGCTCATGTACTTTCTCTTTCAAGTACCGTCAAATAATGCTTACAGAGTGGGTTTGAAGTCTG
ATAATACAGAATTAACAAGAGCTTTGAAGGATATGCCAAATGATAAAGCACATCTGAAAGTGATTAGTGTTTCTGAAAAT
AATCGCTCAACAATGAATGAGAAAGATTTGAGTGCAATTGTTAGTATTTCGGGAAAAAATATTGATGTTAGTTATGCTAA
TCAGTCAAATGGAACAAGTTCTGCGATTAAGCTACTTTTAACACAAGTCATTCAAGAAAGCCAAGTTAAGGCAACTAAAG
AGGAGACTAAGCAGGCTCTGCAAAATTTGATAAGTAAGTTACCTCAAACATCAGGTCAAAGTTTTTCAACAAATTTCAGG
GTTGATACAGAGCAGTATAAAGTAACGAGTCACTATTTGTACGGAGATCCTAGTAGTACAAATGCTACTTTTGATGATTT
AGCACCGATTTTAGTTGGAGCCTTTGCTTTCTTCTTGGTGCTTCTAATTTCAGGTATTTCATTAGTGAACGAGCGAACCT
CAGGGATGCTGGGGAGAATGTTAGTCACTCCTGTGAAACGAACTGAAATCGTGACGGGCTATACTTTGAGTTATGGAATT
CTTGCAATGATTCAAACAGCACTCATGGTTGTTTTTACTTATTGGATTTTAGGGGTTCATCATAACGGAAATATTGGTTG
GGTCTTTGTCATTAATTTCTTTATCGCCATCATCGCTTTATTGTTTGGATTACTTTTATCCACATTAGCAAAAACAGAAT
TTCAATTTGTACAGATGATTCCTTTAGCGATTGTTCCCCAATTTTTATTTTCTGGTTTGATTCCTGTGGATACGATGCCT
GTCATTCTTCAAGCAATCGCTCATTGTATTCCGGTTTATTATGGAATTTCTGCCATGCAAGAGGTAGTTAAAAGAGGAGT
AGGATTCTCTGGAATCTGGTTTGATTTGCTCATTATGCTACTTTTTGCGGCTCTGCTCTATCTTGCGAATGTTTTAGCTT
TGAAAAATGTTCGTCGGACTTAA

Upstream 100 bases:

>100_bases
CGCCAAAGGAAATTAAGGAAAAGTATCAAGTTGCCTCGGTTGAGGAAGCTTTTATTGTTGCGGGAAAAAATTTAGAGTTA
CAAAATAAGGGGGCAGCGAA

Downstream 100 bases:

>100_bases
AAATATGCTTTTGATTGTATAACTACTGGATAGTCTATCTGGTGGTTATTTTGGTTTTTAAAAGAAAAAGAAAGTACTTT
TTTGTTATAATTAAAGCATG

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MRTLAIFKRIMLQRRGDPRTLAMMFLAPIFILTLMYFLFQVPSNNAYRVGLKSDNTELTRALKDMPNDKAHLKVISVSEN
NRSTMNEKDLSAIVSISGKNIDVSYANQSNGTSSAIKLLLTQVIQESQVKATKEETKQALQNLISKLPQTSGQSFSTNFR
VDTEQYKVTSHYLYGDPSSTNATFDDLAPILVGAFAFFLVLLISGISLVNERTSGMLGRMLVTPVKRTEIVTGYTLSYGI
LAMIQTALMVVFTYWILGVHHNGNIGWVFVINFFIAIIALLFGLLLSTLAKTEFQFVQMIPLAIVPQFLFSGLIPVDTMP
VILQAIAHCIPVYYGISAMQEVVKRGVGFSGIWFDLLIMLLFAALLYLANVLALKNVRRT

Sequences:

>Translated_380_residues
MRTLAIFKRIMLQRRGDPRTLAMMFLAPIFILTLMYFLFQVPSNNAYRVGLKSDNTELTRALKDMPNDKAHLKVISVSEN
NRSTMNEKDLSAIVSISGKNIDVSYANQSNGTSSAIKLLLTQVIQESQVKATKEETKQALQNLISKLPQTSGQSFSTNFR
VDTEQYKVTSHYLYGDPSSTNATFDDLAPILVGAFAFFLVLLISGISLVNERTSGMLGRMLVTPVKRTEIVTGYTLSYGI
LAMIQTALMVVFTYWILGVHHNGNIGWVFVINFFIAIIALLFGLLLSTLAKTEFQFVQMIPLAIVPQFLFSGLIPVDTMP
VILQAIAHCIPVYYGISAMQEVVKRGVGFSGIWFDLLIMLLFAALLYLANVLALKNVRRT
>Mature_380_residues
MRTLAIFKRIMLQRRGDPRTLAMMFLAPIFILTLMYFLFQVPSNNAYRVGLKSDNTELTRALKDMPNDKAHLKVISVSEN
NRSTMNEKDLSAIVSISGKNIDVSYANQSNGTSSAIKLLLTQVIQESQVKATKEETKQALQNLISKLPQTSGQSFSTNFR
VDTEQYKVTSHYLYGDPSSTNATFDDLAPILVGAFAFFLVLLISGISLVNERTSGMLGRMLVTPVKRTEIVTGYTLSYGI
LAMIQTALMVVFTYWILGVHHNGNIGWVFVINFFIAIIALLFGLLLSTLAKTEFQFVQMIPLAIVPQFLFSGLIPVDTMP
VILQAIAHCIPVYYGISAMQEVVKRGVGFSGIWFDLLIMLLFAALLYLANVLALKNVRRT

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=203, Percent_Identity=25.615763546798, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787010, Length=178, Percent_Identity=25.2808988764045, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI226510979, Length=231, Percent_Identity=24.6753246753247, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24650853, Length=177, Percent_Identity=30.5084745762712, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24650855, Length=177, Percent_Identity=30.5084745762712, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24582014, Length=208, Percent_Identity=25.4807692307692, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24582012, Length=208, Percent_Identity=25.4807692307692, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42318; Mature: 42318

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLAIFKRIMLQRRGDPRTLAMMFLAPIFILTLMYFLFQVPSNNAYRVGLKSDNTELTR
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHH
ALKDMPNDKAHLKVISVSENNRSTMNEKDLSAIVSISGKNIDVSYANQSNGTSSAIKLLL
HHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHH
TQVIQESQVKATKEETKQALQNLISKLPQTSGQSFSTNFRVDTEQYKVTSHYLYGDPSST
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHEEEHEEEECCCCCC
NATFDDLAPILVGAFAFFLVLLISGISLVNERTSGMLGRMLVTPVKRTEIVTGYTLSYGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECHHHHHHH
LAMIQTALMVVFTYWILGVHHNGNIGWVFVINFFIAIIALLFGLLLSTLAKTEFQFVQMI
HHHHHHHHHHHHHHHHHHEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAIVPQFLFSGLIPVDTMPVILQAIAHCIPVYYGISAMQEVVKRGVGFSGIWFDLLIML
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LFAALLYLANVLALKNVRRT
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTLAIFKRIMLQRRGDPRTLAMMFLAPIFILTLMYFLFQVPSNNAYRVGLKSDNTELTR
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHH
ALKDMPNDKAHLKVISVSENNRSTMNEKDLSAIVSISGKNIDVSYANQSNGTSSAIKLLL
HHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHH
TQVIQESQVKATKEETKQALQNLISKLPQTSGQSFSTNFRVDTEQYKVTSHYLYGDPSST
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHEEEHEEEECCCCCC
NATFDDLAPILVGAFAFFLVLLISGISLVNERTSGMLGRMLVTPVKRTEIVTGYTLSYGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECHHHHHHH
LAMIQTALMVVFTYWILGVHHNGNIGWVFVINFFIAIIALLFGLLLSTLAKTEFQFVQMI
HHHHHHHHHHHHHHHHHHEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAIVPQFLFSGLIPVDTMPVILQAIAHCIPVYYGISAMQEVVKRGVGFSGIWFDLLIML
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LFAALLYLANVLALKNVRRT
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]