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The map label for this gene is ycdF

Identifier: 15672219

GI number: 15672219

Start: 234472

End: 235017

Strand: Direct

Name: ycdF

Synonym: L34460

Alternate gene names: NA

Gene position: 234472-235017 (Clockwise)

Preceding gene: 15672216

Following gene: 15672221

Centisome position: 9.91

GC content: 34.25

Gene sequence:

>546_bases
ATGAAAAAAACAAGTCAAGAAAAATTATATGAAGCAGCCTTGGAATTGATTACAGCGCAAGGTTATGAGAATACAACTGT
TCTACAAATTGCCACCAAAGCTGGTTTAACAGAGCGAACATTTTTTCGTAAATTTAAAAATAAAGCAGATATTTTCTTTG
CTGGCGGTGAGCAATACAGCCAAATGTTACTGACAAAAATGAAAGAATCAAAAGCGAATAATCCTTTGGCTATTGTTCTT
GAAAGTTATTTTTACGCTGCAGACTTCTTTGATGAACATCGAGAAAGAACAGTCAAAAGACAAAAAATAATTGCCAGTCA
CCCAGATTTGGAAGAACGCGAACTTTTAAAACAAAGCAAAATCGAAGAACTATTAGTTGAATATTTACTGACAGCTTATG
GTGAAAGAAGTGCAAGATTAGCTGTTCGCCTAGCTCGAGCAGTTTATAGTGTGGCTTGGGAAGAATGGTTAGAAAATGAT
GCTGACAGTTTACATCATTTATTAGAAAAAGCAATTGCAGACTTTAATGAACTCAAAAATTACTGA

Upstream 100 bases:

>100_bases
GCATTTTATATAATGTCAGTAACTGACATTTGAGAATAGTATAATCCTTTAGAGGAGTCTTGTCAAGGGAAATGTCACAA
ACTGACATTTAGGGGAAGAG

Downstream 100 bases:

>100_bases
CGGAAATACTAGCATATCCGTAAATGCGCTAAAGCGCAAACGGCTATCCTATGACAGAAGTTTTGTCAGCAAAATAAAAA
CTACTGACGAGCCTGTCAGC

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR; Transcription Regulator; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKKTSQEKLYEAALELITAQGYENTTVLQIATKAGLTERTFFRKFKNKADIFFAGGEQYSQMLLTKMKESKANNPLAIVL
ESYFYAADFFDEHRERTVKRQKIIASHPDLEERELLKQSKIEELLVEYLLTAYGERSARLAVRLARAVYSVAWEEWLEND
ADSLHHLLEKAIADFNELKNY

Sequences:

>Translated_181_residues
MKKTSQEKLYEAALELITAQGYENTTVLQIATKAGLTERTFFRKFKNKADIFFAGGEQYSQMLLTKMKESKANNPLAIVL
ESYFYAADFFDEHRERTVKRQKIIASHPDLEERELLKQSKIEELLVEYLLTAYGERSARLAVRLARAVYSVAWEEWLEND
ADSLHHLLEKAIADFNELKNY
>Mature_181_residues
MKKTSQEKLYEAALELITAQGYENTTVLQIATKAGLTERTFFRKFKNKADIFFAGGEQYSQMLLTKMKESKANNPLAIVL
ESYFYAADFFDEHRERTVKRQKIIASHPDLEERELLKQSKIEELLVEYLLTAYGERSARLAVRLARAVYSVAWEEWLEND
ADSLHHLLEKAIADFNELKNY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21049; Mature: 21049

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTSQEKLYEAALELITAQGYENTTVLQIATKAGLTERTFFRKFKNKADIFFAGGEQYS
CCCCHHHHHHHHHHHHHHHCCCCCCHHEEEHHHCCCHHHHHHHHHCCCCCEEEECCHHHH
QMLLTKMKESKANNPLAIVLESYFYAADFFDEHRERTVKRQKIIASHPDLEERELLKQSK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IEELLVEYLLTAYGERSARLAVRLARAVYSVAWEEWLENDADSLHHLLEKAIADFNELKN
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Y
C
>Mature Secondary Structure
MKKTSQEKLYEAALELITAQGYENTTVLQIATKAGLTERTFFRKFKNKADIFFAGGEQYS
CCCCHHHHHHHHHHHHHHHCCCCCCHHEEEHHHCCCHHHHHHHHHCCCCCEEEECCHHHH
QMLLTKMKESKANNPLAIVLESYFYAADFFDEHRERTVKRQKIIASHPDLEERELLKQSK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IEELLVEYLLTAYGERSARLAVRLARAVYSVAWEEWLENDADSLHHLLEKAIADFNELKN
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA