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The map label for this gene is ycdB

Identifier: 15672214

GI number: 15672214

Start: 231298

End: 232014

Strand: Direct

Name: ycdB

Synonym: L31280

Alternate gene names: 15672214

Gene position: 231298-232014 (Clockwise)

Preceding gene: 15672213

Following gene: 15672215

Centisome position: 9.78

GC content: 38.35

Gene sequence:

>717_bases
ATGGGACGTAAATGGGCCAATATTGTTGCTAAAAAAACCGCTAAAGACGGTGCAACTTCTAAAGTATATGCAAAATTCGG
TGTTGAAATCTATGCCGCTGCTAAACAAGGTGAACCAGATCCAGAATCAAATTCATCATTAAAATTCGTTATTGAACGTG
CCAAACAAGCGCAAGTTCCAAAACACGTTATTGATAAAGCAATCGATAAAGCCAAAGGTGGTGGTGATGAAACTTTCGTT
CAAGGACGTTATGAAGGATTTGGACCAAATGGTTCAATGGTTATCGCCGAAACTTTGACTTCAAATGTTAACCGTACAAT
CGCTAATGTCCGTACTACTTTCCACAAAAATGGTGGGAATATCGGAGCAGCCGGTGCTGTCAGCTATATGTTTGACAATA
CAGGGGTGATTGTTTTTGAAGGAACTGACCCTGACCATATCTTTGAAATTTTGCTTGATGCTGAAGTTGATGTTCGTGAT
GTGACCGAAGAAGAAGGAAATATTGTTGTTTATACAGAACCAACAGACCTTCATAAAGGAATTGCAGCACTTAAAGAAGC
TGGAATTACTGAGTTCTCAACAACAGAATTAGAAATGATTCCTCAATCAGAAGTTGAACTTTCACCTGAAGATTTAGAAA
TCTTTGAAGGACTCATTGATGCTCTTGAAGATGACGATGACGTCCAAAAAGTTTATCATAACGTTGCAAATCTCTAA

Upstream 100 bases:

>100_bases
TAGACGAGCCTTTACAAATTGTGATATAATATGATAGAAAAAATCATGCAGATTAATCCTCTGCCAATAATTTAAATAAA
ATTTTAAGGAGATTATTCCA

Downstream 100 bases:

>100_bases
TTTGAAAATAAAAAATCTGTCATTAAGGCAGGTTTTTTTTATTTATAAATTTGATATAATAAAAGCATGTCTAGCCCGAA
AATTGATTATAAAAAATCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFV
QGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGNIGAAGAVSYMFDNTGVIVFEGTDPDHIFEILLDAEVDVRD
VTEEEGNIVVYTEPTDLHKGIAALKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHNVANL

Sequences:

>Translated_238_residues
MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFV
QGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGNIGAAGAVSYMFDNTGVIVFEGTDPDHIFEILLDAEVDVRD
VTEEEGNIVVYTEPTDLHKGIAALKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHNVANL
>Mature_237_residues
GRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQ
GRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGNIGAAGAVSYMFDNTGVIVFEGTDPDHIFEILLDAEVDVRDV
TEEEGNIVVYTEPTDLHKGIAALKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHNVANL

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family [H]

Homologues:

Organism=Homo sapiens, GI27545315, Length=242, Percent_Identity=33.8842975206612, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1788294, Length=238, Percent_Identity=94.1176470588235, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1788171, Length=236, Percent_Identity=40.2542372881356, Blast_Score=162, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6321458, Length=268, Percent_Identity=33.2089552238806, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002876
- InterPro:   IPR017856 [H]

Pfam domain/function: PF01709 DUF28 [H]

EC number: NA

Molecular weight: Translated: 25851; Mature: 25720

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP
CCCHHHHHHHHHHCCCCCCHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN
HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
IGAAGAVSYMFDNTGVIVFEGTDPDHIFEILLDAEVDVRDVTEEEGNIVVYTEPTDLHKG
CCCHHHEEEEECCCCEEEEECCCHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCHHHHHH
IAALKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHNVANL
HHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
GRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP
CCHHHHHHHHHHCCCCCCHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN
HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
IGAAGAVSYMFDNTGVIVFEGTDPDHIFEILLDAEVDVRDVTEEEGNIVVYTEPTDLHKG
CCCHHHEEEEECCCCEEEEECCCHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCHHHHHH
IAALKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHNVANL
HHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA