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The map label for this gene is rgpF

Identifier: 15672189

GI number: 15672189

Start: 207900

End: 209669

Strand: Direct

Name: rgpF

Synonym: L7894

Alternate gene names: NA

Gene position: 207900-209669 (Clockwise)

Preceding gene: 15672188

Following gene: 15672190

Centisome position: 8.79

GC content: 30.68

Gene sequence:

>1770_bases
ATGAAACGCCTTTTATTATACGTCCATTTCAATAAAAACAATAAAGTAAGTGACCATGTTATTTATCAACTAAAACATAT
GAGAAGTTTATTTGAAAAAGTAATTTTTATCTCAAACAGTGAGTTATCAGAACAATATCAACAACAACTTGTTGACTTTG
TTGATGAGTTCATTCAACGTGAAAATAAAGGTTTTGACTTCGCTGCTTGGCGTGATGGGATGGAGCAAGTAGGGTTTGAC
CAATTAAAGATGTATGATTCGGTTACACTGATGAATGACACTTGTTTTGGTCCTCTTTATGAAATGGCCCCTATTTATGA
AAAGTATGAAATACAAAATATTGATTTTTGGGGGATAACAAATCATCGTGCCTATCATGAATCAAAAAATCACTATTTCG
ATGAGCATATTCAGTCTTATTACAAAGTATTCAACAATAATGTTATTAATTCACAGATCTTTGAAGATTTTTGGAAAAAT
ATTGTTGATTATACGAATGTTCAAGATGTTATTGACCATTACGAAATTCAATCTACAAAAATTTTTATGGATGCTGGGTT
TAAATATGAATCTGTTCTTGATACAAGGGCTCTAGATGCAAAAAATCTTTTGCATCCAGATTTTTCTTATTATGCACCAG
ATGTAATCCTTAAAGAAAAAGTACCCTTTATTAAAGTTAAAGCGTTCCAAAGCATTCAAAGCAATGGTATTGCTTATTAT
ATGCTGGACTATATTGATAGAAACACCGACTATCCAAAATCACTTGTTGTTGATCATCTCAGTACAGTTGGTTATCCAGA
TTTAAATTTTTTATTGCCAAGTAAAATGATTACACCGTTATCAAAAACTGTTCTTCACCAAACTGTTGCAGTGCATTTGC
ATGTATATTATCCAGAATTACTTGAAGAATTTTTAGACGCCTTTAAAAACTTTTCGTTTGATTATGATTTGTATCTAACA
ACTAATACAGATGAAAAAGAAGAAATTATTAAAGAAATGTTAAAGTGTAAGGATGCCAAGGCTAAGCTTGTCAGGACACC
TAATCATGGGCGTGATATAGTGCCGTTTTTAGCACTTAAAGAAGAATTAAAAAAATATGATATTGTTGGTCATTTTCATA
CAAAGCGCTCCTTAGAGGCTGCCTTTTTTGCAGGGGAATCTTGGAGAACTGAGTTAATATCAATGTTGATTGAACCTGCT
GATAACATTATGGCACATTTTGAGCAAAAACAAAAATTAGGAATCGTGATTGCTGATATTCCAAGTTTCTTTAGGTTTAA
CAAAATTGTCAATGCTGACAATGAAAATAAACAGATTGCTCCTATTATGAATGATATCTGGAAAAGAATGAAAATGAATA
AGAAAGTCAATTTTCATGATTTTAATACATTTACAATGAGTTATGGGACATTTTTTTGGGCTAAAATAGAAGTTCTTGAA
CCTTTATTTAATTTAGAAATAATGGATCGAGAAATTCCAAATGAACCCCTGCCCCAAAATACAATTTTGCATGCGATTGA
ACGGGTGCTAATTTATCTTGCATGGGACAAAGAAATGGACTTCAATATCAGCCCAAATAAATTGAATCTTACTCCATTTA
TTGACTCACGAACTTTAAACCAACGTTTTTATATTAGCCCTGAAAATTCAGATGATATAAGATTACGATATGTTTTGGCT
CTTTCAATAAAGAAATTAAAAAGATTAATTGTTTATAGGTTTTATAAATTATTTAAATTGGATACAACAAAGCTATTTTT
GAAAGAGTGA

Upstream 100 bases:

>100_bases
TAAGGCAGAACTCGAAGAGAAAAAGCAAGAGATAGATATCATTAAAAATTCAAAAAGTTACAAATTCCTTCAAAAATTGA
AAGGAAATTAGGGAGAATCA

Downstream 100 bases:

>100_bases
GTATGAAAAGGAATCAAAAATTATTTATCTTGGTTATAAGTGTTATTTTATTATTTATAACTCAATTAGCAGTTAGCATA
ATTCCAAATCAAATGCCTAA

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MKRLLLYVHFNKNNKVSDHVIYQLKHMRSLFEKVIFISNSELSEQYQQQLVDFVDEFIQRENKGFDFAAWRDGMEQVGFD
QLKMYDSVTLMNDTCFGPLYEMAPIYEKYEIQNIDFWGITNHRAYHESKNHYFDEHIQSYYKVFNNNVINSQIFEDFWKN
IVDYTNVQDVIDHYEIQSTKIFMDAGFKYESVLDTRALDAKNLLHPDFSYYAPDVILKEKVPFIKVKAFQSIQSNGIAYY
MLDYIDRNTDYPKSLVVDHLSTVGYPDLNFLLPSKMITPLSKTVLHQTVAVHLHVYYPELLEEFLDAFKNFSFDYDLYLT
TNTDEKEEIIKEMLKCKDAKAKLVRTPNHGRDIVPFLALKEELKKYDIVGHFHTKRSLEAAFFAGESWRTELISMLIEPA
DNIMAHFEQKQKLGIVIADIPSFFRFNKIVNADNENKQIAPIMNDIWKRMKMNKKVNFHDFNTFTMSYGTFFWAKIEVLE
PLFNLEIMDREIPNEPLPQNTILHAIERVLIYLAWDKEMDFNISPNKLNLTPFIDSRTLNQRFYISPENSDDIRLRYVLA
LSIKKLKRLIVYRFYKLFKLDTTKLFLKE

Sequences:

>Translated_589_residues
MKRLLLYVHFNKNNKVSDHVIYQLKHMRSLFEKVIFISNSELSEQYQQQLVDFVDEFIQRENKGFDFAAWRDGMEQVGFD
QLKMYDSVTLMNDTCFGPLYEMAPIYEKYEIQNIDFWGITNHRAYHESKNHYFDEHIQSYYKVFNNNVINSQIFEDFWKN
IVDYTNVQDVIDHYEIQSTKIFMDAGFKYESVLDTRALDAKNLLHPDFSYYAPDVILKEKVPFIKVKAFQSIQSNGIAYY
MLDYIDRNTDYPKSLVVDHLSTVGYPDLNFLLPSKMITPLSKTVLHQTVAVHLHVYYPELLEEFLDAFKNFSFDYDLYLT
TNTDEKEEIIKEMLKCKDAKAKLVRTPNHGRDIVPFLALKEELKKYDIVGHFHTKRSLEAAFFAGESWRTELISMLIEPA
DNIMAHFEQKQKLGIVIADIPSFFRFNKIVNADNENKQIAPIMNDIWKRMKMNKKVNFHDFNTFTMSYGTFFWAKIEVLE
PLFNLEIMDREIPNEPLPQNTILHAIERVLIYLAWDKEMDFNISPNKLNLTPFIDSRTLNQRFYISPENSDDIRLRYVLA
LSIKKLKRLIVYRFYKLFKLDTTKLFLKE
>Mature_589_residues
MKRLLLYVHFNKNNKVSDHVIYQLKHMRSLFEKVIFISNSELSEQYQQQLVDFVDEFIQRENKGFDFAAWRDGMEQVGFD
QLKMYDSVTLMNDTCFGPLYEMAPIYEKYEIQNIDFWGITNHRAYHESKNHYFDEHIQSYYKVFNNNVINSQIFEDFWKN
IVDYTNVQDVIDHYEIQSTKIFMDAGFKYESVLDTRALDAKNLLHPDFSYYAPDVILKEKVPFIKVKAFQSIQSNGIAYY
MLDYIDRNTDYPKSLVVDHLSTVGYPDLNFLLPSKMITPLSKTVLHQTVAVHLHVYYPELLEEFLDAFKNFSFDYDLYLT
TNTDEKEEIIKEMLKCKDAKAKLVRTPNHGRDIVPFLALKEELKKYDIVGHFHTKRSLEAAFFAGESWRTELISMLIEPA
DNIMAHFEQKQKLGIVIADIPSFFRFNKIVNADNENKQIAPIMNDIWKRMKMNKKVNFHDFNTFTMSYGTFFWAKIEVLE
PLFNLEIMDREIPNEPLPQNTILHAIERVLIYLAWDKEMDFNISPNKLNLTPFIDSRTLNQRFYISPENSDDIRLRYVLA
LSIKKLKRLIVYRFYKLFKLDTTKLFLKE

Specific function: Could have an enzymatic function [H]

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To V.anguillarum virulence protein virA [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007739 [H]

Pfam domain/function: PF05045 RgpF [H]

EC number: NA

Molecular weight: Translated: 69996; Mature: 69996

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLLYVHFNKNNKVSDHVIYQLKHMRSLFEKVIFISNSELSEQYQQQLVDFVDEFIQR
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHH
ENKGFDFAAWRDGMEQVGFDQLKMYDSVTLMNDTCFGPLYEMAPIYEKYEIQNIDFWGIT
CCCCCCHHHHHHHHHHCCHHHHHHHHCEEEECCCCCCCHHHHCCHHHHEEECCEEEECCC
NHRAYHESKNHYFDEHIQSYYKVFNNNVINSQIFEDFWKNIVDYTNVQDVIDHYEIQSTK
CCCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEE
IFMDAGFKYESVLDTRALDAKNLLHPDFSYYAPDVILKEKVPFIKVKAFQSIQSNGIAYY
EEEECCCCHHHHHHHHHCCHHHCCCCCCHHCCCCEEEECCCCEEEHHHHHHHHHCCEEEE
MLDYIDRNTDYPKSLVVDHLSTVGYPDLNFLLPSKMITPLSKTVLHQTVAVHLHVYYPEL
EEEHHCCCCCCCHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHEEEEEEECHHH
LEEFLDAFKNFSFDYDLYLTTNTDEKEEIIKEMLKCKDAKAKLVRTPNHGRDIVPFLALK
HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHH
EELKKYDIVGHFHTKRSLEAAFFAGESWRTELISMLIEPADNIMAHFEQKQKLGIVIADI
HHHHHHCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECC
PSFFRFNKIVNADNENKQIAPIMNDIWKRMKMNKKVNFHDFNTFTMSYGTFFWAKIEVLE
HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEECCEEEEECCHHHHHHHHHHH
PLFNLEIMDREIPNEPLPQNTILHAIERVLIYLAWDKEMDFNISPNKLNLTPFIDSRTLN
HHHCCEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEECCCCCC
QRFYISPENSDDIRLRYVLALSIKKLKRLIVYRFYKLFKLDTTKLFLKE
CEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECC
>Mature Secondary Structure
MKRLLLYVHFNKNNKVSDHVIYQLKHMRSLFEKVIFISNSELSEQYQQQLVDFVDEFIQR
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHH
ENKGFDFAAWRDGMEQVGFDQLKMYDSVTLMNDTCFGPLYEMAPIYEKYEIQNIDFWGIT
CCCCCCHHHHHHHHHHCCHHHHHHHHCEEEECCCCCCCHHHHCCHHHHEEECCEEEECCC
NHRAYHESKNHYFDEHIQSYYKVFNNNVINSQIFEDFWKNIVDYTNVQDVIDHYEIQSTK
CCCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEE
IFMDAGFKYESVLDTRALDAKNLLHPDFSYYAPDVILKEKVPFIKVKAFQSIQSNGIAYY
EEEECCCCHHHHHHHHHCCHHHCCCCCCHHCCCCEEEECCCCEEEHHHHHHHHHCCEEEE
MLDYIDRNTDYPKSLVVDHLSTVGYPDLNFLLPSKMITPLSKTVLHQTVAVHLHVYYPEL
EEEHHCCCCCCCHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHEEEEEEECHHH
LEEFLDAFKNFSFDYDLYLTTNTDEKEEIIKEMLKCKDAKAKLVRTPNHGRDIVPFLALK
HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHH
EELKKYDIVGHFHTKRSLEAAFFAGESWRTELISMLIEPADNIMAHFEQKQKLGIVIADI
HHHHHHCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECC
PSFFRFNKIVNADNENKQIAPIMNDIWKRMKMNKKVNFHDFNTFTMSYGTFFWAKIEVLE
HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEECCEEEEECCHHHHHHHHHHH
PLFNLEIMDREIPNEPLPQNTILHAIERVLIYLAWDKEMDFNISPNKLNLTPFIDSRTLN
HHHCCEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEECCCCCC
QRFYISPENSDDIRLRYVLALSIKKLKRLIVYRFYKLFKLDTTKLFLKE
CEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]