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The map label for this gene is cshA

Identifier: 15672079

GI number: 15672079

Start: 99269

End: 100528

Strand: Reverse

Name: cshA

Synonym: L99272

Alternate gene names: 15672079

Gene position: 100528-99269 (Counterclockwise)

Preceding gene: 15672080

Following gene: 15672078

Centisome position: 4.25

GC content: 37.94

Gene sequence:

>1260_bases
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Upstream 100 bases:

>100_bases
GGTGAATATATTGATGATTGCATTCTCGCCTTCTATCTAGACAAAAGCCTTATGTAAACCAGATTTACATTTGTTGTAAA
CCTATGGATTGGAGAATAAT

Downstream 100 bases:

>100_bases
CAAATCTGTCAGTAAATAGAGCACAATAAAATTTACTGACAGAAAGTGAAAAATATGGTAGAACAAATCACTCAACTTAA
GTTGTCAACAATTGTAAAAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Sequences:

>Translated_419_residues
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
>Mature_418_residues
AQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRLQ
EIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVNL
SLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSAL
QKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLALS
PKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGRY
EKALHSRKEWIDEQKKRS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=36.0091743119266, Blast_Score=238, Evalue=6e-63,
Organism=Homo sapiens, GI18426904, Length=418, Percent_Identity=32.5358851674641, Blast_Score=196, Evalue=2e-50,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=36.5967365967366, Blast_Score=264, Evalue=7e-72,
Organism=Saccharomyces cerevisiae, GI6324111, Length=421, Percent_Identity=33.9667458432304, Blast_Score=214, Evalue=2e-56,
Organism=Saccharomyces cerevisiae, GI6324039, Length=318, Percent_Identity=26.1006289308176, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46782; Mature: 46650

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIA
CCCCHHHHCCCCCHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GTMNVAFRTFNATTDTKKRLQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQI
HHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHCCCCCE
ILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVNLSLQDKERGFDFDVTIDDDA
EEEEECCCCCCEEEEHHHHCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEECCCE
LYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
EEEEEECCCCCHHHHHHHHHEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAE
HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
KLGFPEARIPLANIIIDLALSPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKD
HHCCCHHCCCHHHHHEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGRYEKALHSRKEWIDEQKKRS
HCCCCEEHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIA
CCCHHHHCCCCCHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GTMNVAFRTFNATTDTKKRLQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQI
HHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHCCCCCE
ILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVNLSLQDKERGFDFDVTIDDDA
EEEEECCCCCCEEEEHHHHCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEECCCE
LYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
EEEEEECCCCCHHHHHHHHHEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAE
HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
KLGFPEARIPLANIIIDLALSPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKD
HHCCCHHCCCHHHHHEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGRYEKALHSRKEWIDEQKKRS
HCCCCEEHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]