| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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The map label for this gene is tktA
Identifier: 13358151
GI number: 13358151
Start: 733597
End: 735558
Strand: Reverse
Name: tktA
Synonym: UU586
Alternate gene names: 13358151
Gene position: 735558-733597 (Counterclockwise)
Preceding gene: 13358152
Following gene: 13358150
Centisome position: 97.85
GC content: 29.56
Gene sequence:
>1962_bases ATGAATCGTTATGTTAACGCAATGCGTTCACTTGCTTTACAGGCTATTAATAAAGCAAAGCAAGGTCACAGTGGAATGAG TATTTCAGCTGCACCTATTGTTTATACCCTTTATAAGGGATTAATGACTATTTCAAAATCACATCCAAAGTGATTTAATC GCGATCGTTTGGTTTTATCAGCTGGTCATGGATCGATGGCATTATATCCTGTTTTTTATTTTTCATCATTATTAACATTA GATGACATTAAAAATTTTCGCAATGATAATTATTTAACACCAGGTCATCCTGAAGTGTTGGCTAATAATTATATTGATGC ATCAACAGGACCACTAGGGCAAGGGGTTGCTAATGCAGTTGGTATGGCAATTACTGAAAGTTATTTAAGAACTGAATTTG CTACTCTTAAAGGTGTTATTGATCATTATACTTATTGTATTGTTGGCGATGGGGACCTACAAGAGGGAATTTGTTATGAG GCAATGAGTATTGCTGGAAAATTAAAATTATCGAAATTAATTATTTTACATGATTCAAATGATTACCAATTAGATTCAGC AGTAAGTGATGTTAATATTGAAGATTTAAAAATGCGTGTTGAATCAATGGGTTGAAATTATCTAAAAACAGATAATAATC CTGAAAATATTTTCAAAGCAATTGCTGAAGCTAAATGAAAAAAGAATGTTAAACCAACGTTTATTGAAGTCAAAACAATC ATTGGTGAGGGGACATCTTTTGAAAATAGTAATGAAGCGCATGCTGCAGCAATTTCTAATGATGAATTAGAAAAATTTTC TAAGCGTTTTCATATTAAAACAAATAATTTTGAATTTCATCAGGAAATTTTTGATCACTTCTTTTTTAATGTTGTAGCTC GGGGCGAAAGTGCTTATAATCAATGACAACAATTAGTTGACCAATATATGCAAACTAATCCAGAACAAATGCAACGTTTA TTAAATTATATTAATGGTAATTATGAAGATTTAAATAAATTATTAGATGAAAATAAAATTACTAATTTAAATGATTCTAC TCGCAGTTATTTAAAACAATATTTTAATCAATTAAAAGATTTAAAATCAGCTCTTGTTTTATCTGCTGATTTAGCTAAAT CAACTTTCACAAAAATAGGCGAAGGCGCTTTTAACGATAACCATAAAAATCCATATATTAAATTCGGTATTCGTGAATTT GCTATGGCAGGAGCGATGAATGGAATAAGTTTACATCAAGGCGTTAAAGCGATAGGAGGCACTTTTTTAGCTTTTTCTGA TTATATGAAACCAGCAATTCGTTTAGCTGCCATTAGTAATTTAGCTAATTTATTTATTTTTAGTCACGATAGTTATGCAG TGGGTGGTGATGGACCTACACATCAACCTGTCGATCAATTACCAATGTTAAGAGCAATTCCAAATGTAGAAGTAATTCGT CCTGCTGATCATTATGAAGTTAAATATGCTCTTTCATATAGTTTTAAACAAAAACAAAAACCGATTTGTTTAATTACTTC ACGTCAAACTATTAAACAAATTAATGATCAAAAACCACAAGATTTTAGTAAGGGAGCATATATTATTAATTCGCCTTTTT CTTTTTGTAAAGATGTAGATTACACGATTATTGCTAGTGGTAGTGAAGTTAGTTTAGCAAATGACGCAGCAAAAGAACTT TTTGAAAAACATAAACTTAAAATTAAAGTTATTTCTGCTTTTAACTTAAATTTATTTTTACGTCAAAAACCTGAAGATAT TAAGAGCCTTTTAGCTTCAAAAAATGGTCTATTAGCAATTGAAGCATCAAGCGAAATGCTTTGATGAAAATTATCAATTT ATACAAATAAATTTATACAAATTGCTGCTAATCAATTTGGGCGTAGTGCAGATGGTGATAAATTAATGAATGAATTTGGT TTTAGTGTTAAAAATATTATTAATCAACTTTTAAACCAATAA
Upstream 100 bases:
>100_bases CCGTTGGAAATGATGCAAATAAAGCAATTAACAAATTAGAAGAAATTTTAATTGAACAGAAATTAATTTAAATATCTTTA TTTAGTGGAGACTATTAAAT
Downstream 100 bases:
>100_bases TAAGGAATATCATGAATAAGTATAATATTTATGTAGATCACACATTATTAAAAGCTGACGCAAGTTTAGAAGAGATTCAT AAGTTGTGTGAAGAAGCAGA
Product: transketolase
Products: NA
Alternate protein names: TK [H]
Number of amino acids: Translated: 653; Mature: 653
Protein sequence:
>653_residues MNRYVNAMRSLALQAINKAKQGHSGMSISAAPIVYTLYKGLMTISKSHPKWFNRDRLVLSAGHGSMALYPVFYFSSLLTL DDIKNFRNDNYLTPGHPEVLANNYIDASTGPLGQGVANAVGMAITESYLRTEFATLKGVIDHYTYCIVGDGDLQEGICYE AMSIAGKLKLSKLIILHDSNDYQLDSAVSDVNIEDLKMRVESMGWNYLKTDNNPENIFKAIAEAKWKKNVKPTFIEVKTI IGEGTSFENSNEAHAAAISNDELEKFSKRFHIKTNNFEFHQEIFDHFFFNVVARGESAYNQWQQLVDQYMQTNPEQMQRL LNYINGNYEDLNKLLDENKITNLNDSTRSYLKQYFNQLKDLKSALVLSADLAKSTFTKIGEGAFNDNHKNPYIKFGIREF AMAGAMNGISLHQGVKAIGGTFLAFSDYMKPAIRLAAISNLANLFIFSHDSYAVGGDGPTHQPVDQLPMLRAIPNVEVIR PADHYEVKYALSYSFKQKQKPICLITSRQTIKQINDQKPQDFSKGAYIINSPFSFCKDVDYTIIASGSEVSLANDAAKEL FEKHKLKIKVISAFNLNLFLRQKPEDIKSLLASKNGLLAIEASSEMLWWKLSIYTNKFIQIAANQFGRSADGDKLMNEFG FSVKNIINQLLNQ
Sequences:
>Translated_653_residues MNRYVNAMRSLALQAINKAKQGHSGMSISAAPIVYTLYKGLMTISKSHPK*FNRDRLVLSAGHGSMALYPVFYFSSLLTL DDIKNFRNDNYLTPGHPEVLANNYIDASTGPLGQGVANAVGMAITESYLRTEFATLKGVIDHYTYCIVGDGDLQEGICYE AMSIAGKLKLSKLIILHDSNDYQLDSAVSDVNIEDLKMRVESMG*NYLKTDNNPENIFKAIAEAK*KKNVKPTFIEVKTI IGEGTSFENSNEAHAAAISNDELEKFSKRFHIKTNNFEFHQEIFDHFFFNVVARGESAYNQ*QQLVDQYMQTNPEQMQRL LNYINGNYEDLNKLLDENKITNLNDSTRSYLKQYFNQLKDLKSALVLSADLAKSTFTKIGEGAFNDNHKNPYIKFGIREF AMAGAMNGISLHQGVKAIGGTFLAFSDYMKPAIRLAAISNLANLFIFSHDSYAVGGDGPTHQPVDQLPMLRAIPNVEVIR PADHYEVKYALSYSFKQKQKPICLITSRQTIKQINDQKPQDFSKGAYIINSPFSFCKDVDYTIIASGSEVSLANDAAKEL FEKHKLKIKVISAFNLNLFLRQKPEDIKSLLASKNGLLAIEASSEML**KLSIYTNKFIQIAANQFGRSADGDKLMNEFG FSVKNIINQLLNQ >Mature_653_residues MNRYVNAMRSLALQAINKAKQGHSGMSISAAPIVYTLYKGLMTISKSHPK*FNRDRLVLSAGHGSMALYPVFYFSSLLTL DDIKNFRNDNYLTPGHPEVLANNYIDASTGPLGQGVANAVGMAITESYLRTEFATLKGVIDHYTYCIVGDGDLQEGICYE AMSIAGKLKLSKLIILHDSNDYQLDSAVSDVNIEDLKMRVESMG*NYLKTDNNPENIFKAIAEAK*KKNVKPTFIEVKTI IGEGTSFENSNEAHAAAISNDELEKFSKRFHIKTNNFEFHQEIFDHFFFNVVARGESAYNQ*QQLVDQYMQTNPEQMQRL LNYINGNYEDLNKLLDENKITNLNDSTRSYLKQYFNQLKDLKSALVLSADLAKSTFTKIGEGAFNDNHKNPYIKFGIREF AMAGAMNGISLHQGVKAIGGTFLAFSDYMKPAIRLAAISNLANLFIFSHDSYAVGGDGPTHQPVDQLPMLRAIPNVEVIR PADHYEVKYALSYSFKQKQKPICLITSRQTIKQINDQKPQDFSKGAYIINSPFSFCKDVDYTIIASGSEVSLANDAAKEL FEKHKLKIKVISAFNLNLFLRQKPEDIKSLLASKNGLLAIEASSEML**KLSIYTNKFIQIAANQFGRSADGDKLMNEFG FSVKNIINQLLNQ
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=651, Percent_Identity=27.3425499231951, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI4507521, Length=651, Percent_Identity=27.3425499231951, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI133778974, Length=666, Percent_Identity=23.7237237237237, Blast_Score=123, Evalue=5e-28, Organism=Homo sapiens, GI225637461, Length=594, Percent_Identity=23.2323232323232, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI225637459, Length=594, Percent_Identity=23.2323232323232, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI225637463, Length=594, Percent_Identity=23.2323232323232, Blast_Score=110, Evalue=4e-24, Organism=Escherichia coli, GI48994911, Length=662, Percent_Identity=34.1389728096677, Blast_Score=350, Evalue=2e-97, Organism=Escherichia coli, GI1788808, Length=662, Percent_Identity=32.02416918429, Blast_Score=318, Evalue=7e-88, Organism=Caenorhabditis elegans, GI17539652, Length=664, Percent_Identity=24.8493975903614, Blast_Score=142, Evalue=4e-34, Organism=Saccharomyces cerevisiae, GI6325331, Length=658, Percent_Identity=34.3465045592705, Blast_Score=344, Evalue=2e-95, Organism=Saccharomyces cerevisiae, GI6319593, Length=662, Percent_Identity=33.987915407855, Blast_Score=340, Evalue=4e-94, Organism=Drosophila melanogaster, GI45551847, Length=583, Percent_Identity=25.7289879931389, Blast_Score=132, Evalue=7e-31, Organism=Drosophila melanogaster, GI45550715, Length=583, Percent_Identity=25.7289879931389, Blast_Score=132, Evalue=7e-31, Organism=Drosophila melanogaster, GI24666278, Length=659, Percent_Identity=23.9757207890744, Blast_Score=126, Evalue=4e-29, Organism=Drosophila melanogaster, GI24645119, Length=543, Percent_Identity=25.9668508287293, Blast_Score=122, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 72309; Mature: 72309
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRYVNAMRSLALQAINKAKQGHSGMSISAAPIVYTLYKGLMTISKSHPKFNRDRLVLSA CCHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE GHGSMALYPVFYFSSLLTLDDIKNFRNDNYLTPGHPEVLANNYIDASTGPLGQGVANAVG CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH MAITESYLRTEFATLKGVIDHYTYCIVGDGDLQEGICYEAMSIAGKLKLSKLIILHDSND HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHEEEEEEEEEECCCC YQLDSAVSDVNIEDLKMRVESMGNYLKTDNNPENIFKAIAEAKKKNVKPTFIEVKTIIGE CCHHHHHCCCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHCC GTSFENSNEAHAAAISNDELEKFSKRFHIKTNNFEFHQEIFDHFFFNVVARGESAYNQQQ CCCCCCCCCCCEEECCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCHHCCHHH LVDQYMQTNPEQMQRLLNYINGNYEDLNKLLDENKITNLNDSTRSYLKQYFNQLKDLKSA HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LVLSADLAKSTFTKIGEGAFNDNHKNPYIKFGIREFAMAGAMNGISLHQGVKAIGGTFLA HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHCCCCCHHHHHHHHHCCHHHH FSDYMKPAIRLAAISNLANLFIFSHDSYAVGGDGPTHQPVDQLPMLRAIPNVEVIRPADH HHHHHHHHHHHHHHHHHHHEEEECCCCEEECCCCCCCCCHHHCCHHHHCCCCEEECCCCC YEVKYALSYSFKQKQKPICLITSRQTIKQINDQKPQDFSKGAYIINSPFSFCKDVDYTII CEEEEEEEECHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCCEEEE ASGSEVSLANDAAKELFEKHKLKIKVISAFNLNLFLRQKPEDIKSLLASKNGLLAIEASS ECCCCEEHHHHHHHHHHHHHCEEEEEEEEECEEEEEECCCHHHHHHHHCCCCEEEEECCC EMLKLSIYTNKFIQIAANQFGRSADGDKLMNEFGFSVKNIINQLLNQ CEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure MNRYVNAMRSLALQAINKAKQGHSGMSISAAPIVYTLYKGLMTISKSHPKFNRDRLVLSA CCHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE GHGSMALYPVFYFSSLLTLDDIKNFRNDNYLTPGHPEVLANNYIDASTGPLGQGVANAVG CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH MAITESYLRTEFATLKGVIDHYTYCIVGDGDLQEGICYEAMSIAGKLKLSKLIILHDSND HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHEEEEEEEEEECCCC YQLDSAVSDVNIEDLKMRVESMGNYLKTDNNPENIFKAIAEAKKKNVKPTFIEVKTIIGE CCHHHHHCCCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHCC GTSFENSNEAHAAAISNDELEKFSKRFHIKTNNFEFHQEIFDHFFFNVVARGESAYNQQQ CCCCCCCCCCCEEECCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCHHCCHHH LVDQYMQTNPEQMQRLLNYINGNYEDLNKLLDENKITNLNDSTRSYLKQYFNQLKDLKSA HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LVLSADLAKSTFTKIGEGAFNDNHKNPYIKFGIREFAMAGAMNGISLHQGVKAIGGTFLA HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHCCCCCHHHHHHHHHCCHHHH FSDYMKPAIRLAAISNLANLFIFSHDSYAVGGDGPTHQPVDQLPMLRAIPNVEVIRPADH HHHHHHHHHHHHHHHHHHHEEEECCCCEEECCCCCCCCCHHHCCHHHHCCCCEEECCCCC YEVKYALSYSFKQKQKPICLITSRQTIKQINDQKPQDFSKGAYIINSPFSFCKDVDYTII CEEEEEEEECHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCCEEEE ASGSEVSLANDAAKELFEKHKLKIKVISAFNLNLFLRQKPEDIKSLLASKNGLLAIEASS ECCCCEEHHHHHHHHHHHHHCEEEEEEEEECEEEEEECCCHHHHHHHHCCCCEEEEECCC EMLKLSIYTNKFIQIAANQFGRSADGDKLMNEFGFSVKNIINQLLNQ CEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633; 11271496 [H]