| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13357981
GI number: 13357981
Start: 483330
End: 484196
Strand: Reverse
Name: Not Available
Synonym: UU419
Alternate gene names: NA
Gene position: 484196-483330 (Counterclockwise)
Preceding gene: 13357987
Following gene: 13357980
Centisome position: 64.41
GC content: 26.07
Gene sequence:
>867_bases ATGCCATTTATTAAAACGCCAAATAAAGATTTTGGATTAGTTGATAACCAAATTGTTTTATCAAGCGATTATAAAAAACG TTATCAACGATATTTTGCAAAAATTACAGGTAGTAGATTAGGTTCTATTTTGAATATTGGTGATTTTACTAATCCAGTTC GTACCTGAGCAATGATGGTTAAAATTTATAATGAACCAATCGATCCAATATACGCTCAAGCCGGTGTTGTAATTGAACCA AAAATCAAAGATTATGTTGAGACTGTTTTAAAAGTTAAATATAAACAATACGAACCTGCGCAAATTGGTTATGATGTGTT TAAAGATAATCAAATTTTTGGTGGAATTCCGGATGGTGAACCAATTGATGAAAATGGTCAATTATTGTACCCAAATCAAC CAATGTTAGAAATTAAAACAACATCTATTGATAGTTTTTCATTTAAAACAATTGATTATGTTCTTGTGCTACAAAAAGAT GAACATAATCATCCAATTATAAAAAAGAAAGGCGATAAACGTGCAAAATGATTTAATAATGATGAAAGTGAAGTTATTAT TTCAGATGAATATCAATTACAATTAGGATTGTATTGTTATTTAAGAAAAATTAGTAAAGGAATTTTTGCTATTGCTTTTT TAACAAGTGAAGATTATATTAATCCGCAAGCATTTGATATTAATAAAAATGAAATTATTTTAGTTAATTATGAGCTTGAT CTAAATGAATTCGAAAAAGTTATTTCAAAAGCAAAAACATGATACGAAGAGTATATTATAAAAGGTATTAGTCCTAAATT AACTAAAGAAGATCTTGAATGATATAAGGTGTGAATCAATAAATATGAAACCAATAATTTATATTAA
Upstream 100 bases:
>100_bases TTTATTAAATATGATTATTCATTTATACATAATTATAAAAAATAAATAATTATATAAATTATAATTTAAAGTTAATGGAT CTAAAATAAGGAGTTAGTTT
Downstream 100 bases:
>100_bases ATATGGGGAATTAACACTAAAAGGTAAAAATCGAACACAATTTATAAAAGTTTTAGTGCACAATATCAAACAAATATTAA TACAATATCAAAATTTAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MPFIKTPNKDFGLVDNQIVLSSDYKKRYQRYFAKITGSRLGSILNIGDFTNPVRTWAMMVKIYNEPIDPIYAQAGVVIEP KIKDYVETVLKVKYKQYEPAQIGYDVFKDNQIFGGIPDGEPIDENGQLLYPNQPMLEIKTTSIDSFSFKTIDYVLVLQKD EHNHPIIKKKGDKRAKWFNNDESEVIISDEYQLQLGLYCYLRKISKGIFAIAFLTSEDYINPQAFDINKNEIILVNYELD LNEFEKVISKAKTWYEEYIIKGISPKLTKEDLEWYKVWINKYETNNLY
Sequences:
>Translated_288_residues MPFIKTPNKDFGLVDNQIVLSSDYKKRYQRYFAKITGSRLGSILNIGDFTNPVRT*AMMVKIYNEPIDPIYAQAGVVIEP KIKDYVETVLKVKYKQYEPAQIGYDVFKDNQIFGGIPDGEPIDENGQLLYPNQPMLEIKTTSIDSFSFKTIDYVLVLQKD EHNHPIIKKKGDKRAK*FNNDESEVIISDEYQLQLGLYCYLRKISKGIFAIAFLTSEDYINPQAFDINKNEIILVNYELD LNEFEKVISKAKT*YEEYIIKGISPKLTKEDLE*YKV*INKYETNNLY >Mature_287_residues PFIKTPNKDFGLVDNQIVLSSDYKKRYQRYFAKITGSRLGSILNIGDFTNPVRT*AMMVKIYNEPIDPIYAQAGVVIEPK IKDYVETVLKVKYKQYEPAQIGYDVFKDNQIFGGIPDGEPIDENGQLLYPNQPMLEIKTTSIDSFSFKTIDYVLVLQKDE HNHPIIKKKGDKRAK*FNNDESEVIISDEYQLQLGLYCYLRKISKGIFAIAFLTSEDYINPQAFDINKNEIILVNYELDL NEFEKVISKAKT*YEEYIIKGISPKLTKEDLE*YKV*INKYETNNLY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011604 - InterPro: IPR011335 - InterPro: IPR019080 [H]
Pfam domain/function: PF09588 YqaJ [H]
EC number: NA
Molecular weight: Translated: 32711; Mature: 32580
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFIKTPNKDFGLVDNQIVLSSDYKKRYQRYFAKITGSRLGSILNIGDFTNPVRTAMMVK CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHEEEE IYNEPIDPIYAQAGVVIEPKIKDYVETVLKVKYKQYEPAQIGYDVFKDNQIFGGIPDGEP ECCCCCCCHHHCCCEEECCHHHHHHHHHHHHHHCCCCCHHCCHHHEECCCEECCCCCCCC IDENGQLLYPNQPMLEIKTTSIDSFSFKTIDYVLVLQKDEHNHPIIKKKGDKRAKFNNDE CCCCCCEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCC SEVIISDEYQLQLGLYCYLRKISKGIFAIAFLTSEDYINPQAFDINKNEIILVNYELDLN CEEEEECCEEEEHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEECCCCEEEEEEEECCHH EFEKVISKAKTYEEYIIKGISPKLTKEDLEYKVINKYETNNLY HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC >Mature Secondary Structure PFIKTPNKDFGLVDNQIVLSSDYKKRYQRYFAKITGSRLGSILNIGDFTNPVRTAMMVK CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHEEEE IYNEPIDPIYAQAGVVIEPKIKDYVETVLKVKYKQYEPAQIGYDVFKDNQIFGGIPDGEP ECCCCCCCHHHCCCEEECCHHHHHHHHHHHHHHCCCCCHHCCHHHEECCCEECCCCCCCC IDENGQLLYPNQPMLEIKTTSIDSFSFKTIDYVLVLQKDEHNHPIIKKKGDKRAKFNNDE CCCCCCEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCC SEVIISDEYQLQLGLYCYLRKISKGIFAIAFLTSEDYINPQAFDINKNEIILVNYELDLN CEEEEECCEEEEHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEECCCCEEEEEEEECCHH EFEKVISKAKTYEEYIIKGISPKLTKEDLEYKVINKYETNNLY HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7569993 [H]