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Identifier: 13357857

GI number: 13357857

Start: 340066

End: 340578

Strand: Reverse

Name: Not Available

Synonym: UU297

Alternate gene names: 13357857

Gene position: 340578-340066 (Counterclockwise)

Preceding gene: 13357867

Following gene: 13357851

Centisome position: 45.31

GC content: 20.86

Gene sequence:

>513_bases
ATGAATAATAAAAACAATGGAATGCATCTTGAAGTATTAATTAATAAATCAATTAGCTTGTTTAATTTACAATATCAAGC
TTTTTTTAAAAAAAGGTGTGTTGATATTATTATTAAAAATATTGATAATTCTTATGTTCAAGGAAAAATCAAGCAAAAAA
GTGAAACTGATTATTACGGATTCTATAAAGGTGATTATTTTGATTTTGAAGCTAAACAAACAAATAAAAACTCATTTTTA
ATAAAACAAATACAACCGCACCAACTAGCACATTTGTATTTAATTCATAAAAATTCAGGTTTCTCTTTTTTAATTATTTG
TTTCATTAATTACAATCTATATTTTATTATCACTTTTCAACAATTAATTAACTATTATCAAAAAACTAAGCGGAAATCCA
TTCCCTTTCAATGATTTAAGGATCAATGTATTGAATTAGAAATAATTTTTCCAGGTGTTATTAATTTTAAAAAAATGATT
AATGATTTGAAATTAAAATATTATGATGATTAA

Upstream 100 bases:

>100_bases
ACCTAATTATTAGCATTATTATGTATTTAAAAGGTTATTATGTTTTATATTCATACAAAATAATTATTTTTCCCTAATTA
TATTAATATAGGAGTTAGAG

Downstream 100 bases:

>100_bases
ATAGGTTTATTATTCTTTCGAACATAGTTTTTGTATAGAAATAAATCCTTTGCCGTTTCAATACTATAAATTTTAATTTG
TTTAAGTTTTATGTTATATT

Product: hypothetical protein

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETDYYGFYKGDYFDFEAKQTNKNSFL
IKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQQLINYYQKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMI
NDLKLKYYDD

Sequences:

>Translated_170_residues
MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETDYYGFYKGDYFDFEAKQTNKNSFL
IKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQQLINYYQKTKRKSIPFQ*FKDQCIELEIIFPGVINFKKMI
NDLKLKYYDD
>Mature_170_residues
MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETDYYGFYKGDYFDFEAKQTNKNSFL
IKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQQLINYYQKTKRKSIPFQ*FKDQCIELEIIFPGVINFKKMI
NDLKLKYYDD

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 20323; Mature: 20323

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETDYYG
CCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEE
FYKGDYFDFEAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ
EECCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCEEEEEEHH
QLINYYQKTKRKSIPFQFKDQCIELEIIFPGVINFKKMINDLKLKYYDD
HHHHHHHHHHCCCCCEEECCCEEEEEEECCCHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETDYYG
CCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEE
FYKGDYFDFEAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ
EECCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCEEEEEEHH
QLINYYQKTKRKSIPFQFKDQCIELEIIFPGVINFKKMINDLKLKYYDD
HHHHHHHHHHCCCCCEEECCCEEEEEEECCCHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11048724 [H]