| Definition | Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence. |
|---|---|
| Accession | NC_001988 |
| Length | 192,000 |
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Identifier: 15004849
GI number: 15004849
Start: 155427
End: 156860
Strand: Direct
Name: Not Available
Synonym: CA_P0146
Alternate gene names: 15004849
Gene position: 155427-156860 (Clockwise)
Preceding gene: 15004848
Following gene: 15004851
Centisome position: 80.95
GC content: 29.92
Gene sequence:
>1434_bases CTGAAAACTAATAATATCTGTTTATGCGATAGGTGTCTCAAAAATAAACACAAAAACCCTTTAAATAGGCTATTTCATAT AGAAGAAATATGCCTAAAAAACTGTATTCCTCCACTAACTCTAGTAGATAACAAATATAATGCAATAAATTCTTTAAATA TAATAGAAAAAGCTTACAAACTACTAAAATCAGCAAATATACTAGCAATAAAGGATACAGGAGGCTTTTATTTAATATGT AATGGAAAAAGTAGAGCTGCTATAAATACCTTAAGACGCAGAAAAATGCGCCAATCAAAACCCTTTGCCGTTATGATGAA GGATATCTATACCGTACGAGAGTTTTGTGAGGTTCATTCAGAAGAAAAAAAGGTCTTGGAAAGCTCTGAAAGACCAATTG TAATTTTGGATAAAAAACCTAGTTTAAATCTTCCTAATAACATATCACCAAATTTAAAAAGTATAGGAGTAATGCTCCCT TTCTCTCCTATCAGTAGACTTATGCTTCAAAAGGATTTAGACGTACTTATTATAACCAAAAGCTCTAATATAGAACTCAA AAATGAAACCGCCTTTAAGAATTTAAAAAATATTGCAGATTACTTCTTAATTCACAATAGAGAAATTTCTGTTCCCTTAA AAACTCCAGTAGTTTACTTAATTAATCATAGTAAATGTGTACTGAATCAAAGCCTATCAAGCCCTAAAAAAGCTCTAAAT AACAGTTTTTCAGATAACTTTATTGAAATTATCTACGGCAAAGAAAACACAGAATATAGCAAAAACTTTTTAGGCGGTGA ATTTTTTATTAAAACAAATAAAGAGTTTAAAATGGCTGCACATTTTCAGTACGTAACGCTTCAAGGAAAACCAAGTCCAC TTAGCTCTGCTATAAGCTATCTTCATTTTTTCAAATACAATCCTGATAGTTTTATAGCTAATACGGGTATCACTACAAAT GCTCTAGAAAAAAACTCAAACTCCTGTTTATCAAGTATAGATCATTTTTTTGACTGTATTTCCTCTTTGCTTGATATAGT TCATACAAATACTTATGCTGGAGAAGCAGCTCAAGCGTTAGAAAGTATAGCAGATGCAACTACAAAGGATTATTACAAAT ATAGAATAAAAAATGAAAACAGCGCCTTTGTTATAGATATTAAAAATATTCTTCGTGGAGTTCTAATAGATATACTTATA AAAAAAGAAAAAAGCATGATTGCTACAAAATTTCACAATACAATTTATCATATCACCTGCCAAATGGCTCTTATACTATC AAAACTTTACGGAATAAATAAAATTATTTTAAGTGGCACTACCTTTCAAAACAAGCGTTTACTTGAAGATGTATCTAAAG GACTAAAGAAGGAGAACCTTAGGGTTTATTTCAATTCAAAGCCATATTTAGATAACACTGAAATCCTCTTGTGA
Upstream 100 bases:
>100_bases TATAATAAGGCTCTAGTCTCTAGTAGTCTTAAAATAAAGGTTGAAATAGAAGATTTACCAGATCAAACCGCTATGATAAG AAGGTTAGAAGGTGAAGTAG
Downstream 100 bases:
>100_bases AAACGAAATCATAAAAGAGATATACAAGATAAAAATCTCTTTTATGATTTTAAATTTATTATTAAAACTTCAAAATAGCT TATTTAGTTACAACATACAC
Product: hypothetical protein
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MKTNNICLCDRCLKNKHKNPLNRLFHIEEICLKNCIPPLTLVDNKYNAINSLNIIEKAYKLLKSANILAIKDTGGFYLIC NGKSRAAINTLRRRKMRQSKPFAVMMKDIYTVREFCEVHSEEKKVLESSERPIVILDKKPSLNLPNNISPNLKSIGVMLP FSPISRLMLQKDLDVLIITKSSNIELKNETAFKNLKNIADYFLIHNREISVPLKTPVVYLINHSKCVLNQSLSSPKKALN NSFSDNFIEIIYGKENTEYSKNFLGGEFFIKTNKEFKMAAHFQYVTLQGKPSPLSSAISYLHFFKYNPDSFIANTGITTN ALEKNSNSCLSSIDHFFDCISSLLDIVHTNTYAGEAAQALESIADATTKDYYKYRIKNENSAFVIDIKNILRGVLIDILI KKEKSMIATKFHNTIYHITCQMALILSKLYGINKIILSGTTFQNKRLLEDVSKGLKKENLRVYFNSKPYLDNTEILL
Sequences:
>Translated_477_residues MKTNNICLCDRCLKNKHKNPLNRLFHIEEICLKNCIPPLTLVDNKYNAINSLNIIEKAYKLLKSANILAIKDTGGFYLIC NGKSRAAINTLRRRKMRQSKPFAVMMKDIYTVREFCEVHSEEKKVLESSERPIVILDKKPSLNLPNNISPNLKSIGVMLP FSPISRLMLQKDLDVLIITKSSNIELKNETAFKNLKNIADYFLIHNREISVPLKTPVVYLINHSKCVLNQSLSSPKKALN NSFSDNFIEIIYGKENTEYSKNFLGGEFFIKTNKEFKMAAHFQYVTLQGKPSPLSSAISYLHFFKYNPDSFIANTGITTN ALEKNSNSCLSSIDHFFDCISSLLDIVHTNTYAGEAAQALESIADATTKDYYKYRIKNENSAFVIDIKNILRGVLIDILI KKEKSMIATKFHNTIYHITCQMALILSKLYGINKIILSGTTFQNKRLLEDVSKGLKKENLRVYFNSKPYLDNTEILL >Mature_477_residues MKTNNICLCDRCLKNKHKNPLNRLFHIEEICLKNCIPPLTLVDNKYNAINSLNIIEKAYKLLKSANILAIKDTGGFYLIC NGKSRAAINTLRRRKMRQSKPFAVMMKDIYTVREFCEVHSEEKKVLESSERPIVILDKKPSLNLPNNISPNLKSIGVMLP FSPISRLMLQKDLDVLIITKSSNIELKNETAFKNLKNIADYFLIHNREISVPLKTPVVYLINHSKCVLNQSLSSPKKALN NSFSDNFIEIIYGKENTEYSKNFLGGEFFIKTNKEFKMAAHFQYVTLQGKPSPLSSAISYLHFFKYNPDSFIANTGITTN ALEKNSNSCLSSIDHFFDCISSLLDIVHTNTYAGEAAQALESIADATTKDYYKYRIKNENSAFVIDIKNILRGVLIDILI KKEKSMIATKFHNTIYHITCQMALILSKLYGINKIILSGTTFQNKRLLEDVSKGLKKENLRVYFNSKPYLDNTEILL
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=207, Percent_Identity=36.7149758454106, Blast_Score=115, Evalue=9e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 54400; Mature: 54400
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNNICLCDRCLKNKHKNPLNRLFHIEEICLKNCIPPLTLVDNKYNAINSLNIIEKAYK CCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH LLKSANILAIKDTGGFYLICNGKSRAAINTLRRRKMRQSKPFAVMMKDIYTVREFCEVHS HHHCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC EEKKVLESSERPIVILDKKPSLNLPNNISPNLKSIGVMLPFSPISRLMLQKDLDVLIITK HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHEEEEECCHHHHHHHHHCCCCEEEEEE SSNIELKNETAFKNLKNIADYFLIHNREISVPLKTPVVYLINHSKCVLNQSLSSPKKALN CCCCEECCHHHHHHHHHHHHHHEEECCEEECEECCCEEEEEECCHHHHHHHCCCHHHHHC NSFSDNFIEIIYGKENTEYSKNFLGGEFFIKTNKEFKMAAHFQYVTLQGKPSPLSSAISY CCCCCCEEEEEECCCCCCHHHHCCCCEEEEEECCCEEEEEEEEEEEEECCCCCHHHHHHH LHFFKYNPDSFIANTGITTNALEKNSNSCLSSIDHFFDCISSLLDIVHTNTYAGEAAQAL HHHHEECCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH ESIADATTKDYYKYRIKNENSAFVIDIKNILRGVLIDILIKKEKSMIATKFHNTIYHITC HHHHHHHHCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHH QMALILSKLYGINKIILSGTTFQNKRLLEDVSKGLKKENLRVYFNSKPYLDNTEILL HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEC >Mature Secondary Structure MKTNNICLCDRCLKNKHKNPLNRLFHIEEICLKNCIPPLTLVDNKYNAINSLNIIEKAYK CCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH LLKSANILAIKDTGGFYLICNGKSRAAINTLRRRKMRQSKPFAVMMKDIYTVREFCEVHS HHHCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC EEKKVLESSERPIVILDKKPSLNLPNNISPNLKSIGVMLPFSPISRLMLQKDLDVLIITK HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHEEEEECCHHHHHHHHHCCCCEEEEEE SSNIELKNETAFKNLKNIADYFLIHNREISVPLKTPVVYLINHSKCVLNQSLSSPKKALN CCCCEECCHHHHHHHHHHHHHHEEECCEEECEECCCEEEEEECCHHHHHHHCCCHHHHHC NSFSDNFIEIIYGKENTEYSKNFLGGEFFIKTNKEFKMAAHFQYVTLQGKPSPLSSAISY CCCCCCEEEEEECCCCCCHHHHCCCCEEEEEECCCEEEEEEEEEEEEECCCCCHHHHHHH LHFFKYNPDSFIANTGITTNALEKNSNSCLSSIDHFFDCISSLLDIVHTNTYAGEAAQAL HHHHEECCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH ESIADATTKDYYKYRIKNENSAFVIDIKNILRGVLIDILIKKEKSMIATKFHNTIYHITC HHHHHHHHCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHH QMALILSKLYGINKIILSGTTFQNKRLLEDVSKGLKKENLRVYFNSKPYLDNTEILL HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]