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The map label for this gene is secF

Identifier: 15594998

GI number: 15594998

Start: 692629

End: 693528

Strand: Direct

Name: secF

Synonym: BB0653

Alternate gene names: 15594998

Gene position: 692629-693528 (Clockwise)

Preceding gene: 15594997

Following gene: 15594999

Centisome position: 76.05

GC content: 25.22

Gene sequence:

>900_bases
ATGCAAAGAGTAATTAATTTTTCAAAATATGGAAGCAATGTTTTAATTGTTAGTGCCGTTTTGATTTTGGTTGGGCTTAT
TTATACTTTTTTTTATCATGGTGGATACAATTGGGGAATAGATTTTTCTTCTAGGGTTAATATTAATCTTTCAATAGAAA
AATCAAATATTAAAGAAAATGAAATTAAAAAAATATTCTCTCCGATTTATAAGACTTTAGATGTTAATAGTATTTTTTCA
CCAGATCAGAATAAAAGTGAATTCTCTATTATGGTAAAGTCTGATGTGATTGATTATGCTTTTAAAACAGAAGTTCAAAA
AACAATATTAGATAAACTTAAAGAAACATTTGATGCTAATATTGAAGTTTTGGATTCTTATTTTATTGATTCAAGTTTTT
CTTCTACTTTGAGAATTAGGTCAATTTTTTTGGTATTAGGAACATTTATCCTGATTTTGATTTATATAACTTTAAGATTT
AAACTAAGTTATGCTATTGCTTCCATACTTTCAATATTTCATGATATATTTTTTATAGTTGCTTTTTTAGGGGTATTTAG
AATAGAGATTAATAGCTATATTATTGTGGCAATACTTACCATTATTGGATATTCTTTAAACGACACAATAATTATTTTTG
ATAGGATTAGAGATAATGTTAAGCGATTAACCGATAACACATTTTTAAATGTATTAAACATAAGTATTAGTCAAACTTTA
TCAAGAACTGTTTTGACGTCAGTTACAACATTTGTTGCAGTATTTTCTATTTATGTGTTTACTGAAGGATCTATAAAAGA
TTTTTCTTTGGTATTTATGGTAGGGGTAATTGTTGGAACTTATTCTTCTGTATTCATAGCGTCTCCAATACTTTTAAACC
TGTATAAAAAGATAAAGTAG

Upstream 100 bases:

>100_bases
GCATCCCTTTTTAGTAGTTTGATTTTTTCAAGATTTATTTTGGAATTTATCATATCTGTTAGAAAAAGCAAATTTATAAG
TATATCTTGGAGTTCAAAAT

Downstream 100 bases:

>100_bases
ATCTTAAATAAGATGATATTGTGGCATGAAGTTTTTTGATTTTGGTTCATTAGGATTTTATAGATTTTTTGATTTTCAAA
AATATCTTAATTTTAGCATT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKENEIKKIFSPIYKTLDVNSIFS
PDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDANIEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRF
KLSYAIASILSIFHDIFFIVAFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRLTDNTFLNVLNISISQTL
SRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK

Sequences:

>Translated_299_residues
MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKENEIKKIFSPIYKTLDVNSIFS
PDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDANIEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRF
KLSYAIASILSIFHDIFFIVAFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRLTDNTFLNVLNISISQTL
SRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK
>Mature_299_residues
MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKENEIKKIFSPIYKTLDVNSIFS
PDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDANIEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRF
KLSYAIASILSIFHDIFFIVAFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRLTDNTFLNVLNISISQTL
SRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK

Specific function: Involved in protein export

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily

Homologues:

Organism=Escherichia coli, GI1786610, Length=294, Percent_Identity=28.9115646258503, Blast_Score=144, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECF_BORBU (O51597)

Other databases:

- EMBL:   AE000783
- PIR:   D70181
- RefSeq:   NP_212787.1
- ProteinModelPortal:   O51597
- EnsemblBacteria:   EBBORT00000008452
- GeneID:   1195505
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0653
- NMPDR:   fig|224326.1.peg.1037
- TIGR:   BB_0653
- GeneTree:   EBGT00050000006904
- HOGENOM:   HBG465293
- OMA:   FHIANSS
- PhylomeDB:   O51597
- ProtClustDB:   PRK13022
- BioCyc:   BBUR224326:BB_0653-MONOMER
- InterPro:   IPR022813
- InterPro:   IPR022645
- InterPro:   IPR005665
- PRINTS:   PR01755
- TIGRFAMs:   TIGR00916
- TIGRFAMs:   TIGR00966

Pfam domain/function: PF02355 SecD_SecF

EC number: NA

Molecular weight: Translated: 34057; Mature: 34057

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x403d0974)-; HASH(0xcd525e0)-; HASH(0xc42222c)-; HASH(0x966ff04)-; HASH(0xc3d914c)-; HASH(0xc368c30)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEEEEECCCCCHH
EIKKIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDAN
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSIFHDIFFIV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRLTDNTFLNVLNISISQTL
HHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHH
SRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEEEEECCCCCHH
EIKKIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDAN
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSIFHDIFFIV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRLTDNTFLNVLNISISQTL
HHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHH
SRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685