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The map label for this gene is secD

Identifier: 15594997

GI number: 15594997

Start: 690885

End: 692645

Strand: Direct

Name: secD

Synonym: BB0652

Alternate gene names: 15594997

Gene position: 690885-692645 (Clockwise)

Preceding gene: 15594996

Following gene: 15594998

Centisome position: 75.86

GC content: 32.95

Gene sequence:

>1761_bases
ATGAAAAAAGGATCTAAGCTTATATTGATATTGTTGGTGACGTTTTTTGCATGTCTTTTAATATTTCCGACTTTAAAATG
GTATTTTTTAATGAGCGTTGAGGATAAAAAAATAAGCTCATATTCACAAGAGGCCTTAAGGGATTATTCAAAGAAAAAAG
CCCTGAATGATCTTGTTAAGCTTAAGGAACTGTATAATAAAGATCCCAATAGCAGTATTCCAGCTAGTTTGTCTTATTTA
ATTCCAATAGCAAAAAATAATTATAGGTCTTCAATGAAAATTCCACCTAATATTTTTACTGCTAAAACCTTGCGTGAAGG
ATTTTTGACTGATTCGGATATGGGAGAAGTAAGCTTAGAGATTTATAGATATTATGAGAACATAAAGAAGGGCAAAAGCA
GAATAATACATCTTGGGCTTGATTTGTCTGGAGGGATGAGTGTTACCATTTCTCTTGATTATTCAAGTGTTGAAAAAAAA
TTAGGTCGTTCTTTGACTTTTGCTGAGAGAGAGGATGCCATTTATCGAATAATGCAAATTCTTAAAGATAGGGTARATAG
GTTCGGGCTTACAGAGCCTAAAATTGTAAGAGAAGCCGGGGGAAATAAAATTTTCTTAGATATTCCTGGAGAAAAAGATG
AGAGTAGAGTAAGCACTCTTTTGAGCGGTAAAGGCAATTTGACTTTTTATGTGGTTGATGATGAGTCTACATCTCTTTTG
CATAGAAAAATATTAGAAGCGGGCTCTCTTTTTTCTATTCCTGAAATTCAGGCAAGTATGAACCTTCCAGATAGTAAACA
AATTTTTCCTTGGTATGTTAAAGATTCTTATGGTGTGGATGATGAGTCATCAGTTCGTTATTATGTAGTTGATGCAAGCC
CTGAAAATTCATTTGATGGTGCTCACATTAAAGATGCTGGGGTTTCTAACGATCCTAGAACAGGCCGAGATACTGTTGCT
TTTAGCCTTGATGTTGATGGAAGTGAAAAATTTTTTAAATTTACTCAAAAAAATGTTGGAAAGTCTTTGGCCGTTGTTAT
GGAAGGTAAAATTAAGTCTGTGGCAGGAATTGGATATGCTATCACTGGGGGCAATGTTTCAATTCAAGGTGACTCTTTTG
ATAAAAAAGAGGCTCAAGATCTTGCTTTAGTGTTTAAAACTGCAGCTTTTCCAGTTGATATTAAAATAGATGATTTGAGA
ATAATAGGGCCTACTCTTGGTGCTAGGACTATTGATCTTGGCATTAAAGCTTCTGCGCTTGCTCTTTGTTTAGTTTTTTT
GTTTATATGTGTTTATTATGGTTTGAGTGGTGTTGTAGCTGGATTTTCACTTGTTATTTATAATGTATTTTTAATTTTAG
CGATATTGTCGGCCTTTAATTTTACTTTAACTTTAACAAGCATTGCAGGTCTTATTTTGACAATGGGTATGGCCGTTGAC
ATAAATATAGTTATTTATGAGAGAATTAAAGAAGAAATTAGAGAAGGCAGAAGATTTGAAAATGCTTTTGAAGCTGGTTT
TAAAAAGGCATTTTTATCAATTATGGATGCAAATATAACAACATTTATTGCGGTGCTTTTTTTAACTCTTCTTGGGACAG
GAGTTATTCAAGGTTTTGCTTGGTCTCTTTCTGTTGGAATTGTGGCATCCCTTTTTAGTAGTTTGATTTTTTCAAGATTT
ATTTTGGAATTTATCATATCTGTTAGAAAAAGCAAATTTATAAGTATATCTTGGAGTTCAAAATATGCAAAGAGTAATTA
A

Upstream 100 bases:

>100_bases
TCTGAAAAAAAATGAAGTTAAAAAAAAGGTATTGTTTAAAGGTAAAATTAGAACTGTTAGCTAATAATGGTATTTTTTAA
AAATTTTAAGGATTTGTATA

Downstream 100 bases:

>100_bases
TTTTTCAAAATATGGAAGCAATGTTTTAATTGTTAGTGCCGTTTTGATTTTGGTTGGGCTTATTTATACTTTTTTTTATC
ATGGTGGATACAATTGGGGA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 586

Protein sequence:

>586_residues
MKKGSKLILILLVTFFACLLIFPTLKWYFLMSVEDKKISSYSQEALRDYSKKKALNDLVKLKELYNKDPNSSIPASLSYL
IPIAKNNYRSSMKIPPNIFTAKTLREGFLTDSDMGEVSLEIYRYYENIKKGKSRIIHLGLDLSGGMSVTISLDYSSVEKK
LGRSLTFAEREDAIYRIMQILKDRVBRFGLTEPKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLL
HRKILEAGSLFSIPEIQASMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDTVA
FSLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLR
IIGPTLGARTIDLGIKASALALCLVFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
INIVIYERIKEEIREGRRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF
ILEFIISVRKSKFISISWSSKYAKSN

Sequences:

>Translated_586_residues
MKKGSKLILILLVTFFACLLIFPTLKWYFLMSVEDKKISSYSQEALRDYSKKKALNDLVKLKELYNKDPNSSIPASLSYL
IPIAKNNYRSSMKIPPNIFTAKTLREGFLTDSDMGEVSLEIYRYYENIKKGKSRIIHLGLDLSGGMSVTISLDYSSVEKK
LGRSLTFAEREDAIYRIMQILKDRVBRFGLTEPKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLL
HRKILEAGSLFSIPEIQASMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDTVA
FSLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLR
IIGPTLGARTIDLGIKASALALCLVFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
INIVIYERIKEEIREGRRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF
ILEFIISVRKSKFISISWSSKYAKSN
>Mature_586_residues
MKKGSKLILILLVTFFACLLIFPTLKWYFLMSVEDKKISSYSQEALRDYSKKKALNDLVKLKELYNKDPNSSIPASLSYL
IPIAKNNYRSSMKIPPNIFTAKTLREGFLTDSDMGEVSLEIYRYYENIKKGKSRIIHLGLDLSGGMSVTISLDYSSVEKK
LGRSLTFAEREDAIYRIMQILKDRVBRFGLTEPKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLL
HRKILEAGSLFSIPEIQASMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDTVA
FSLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLR
IIGPTLGARTIDLGIKASALALCLVFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
INIVIYERIKEEIREGRRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF
ILEFIISVRKSKFISISWSSKYAKSN

Specific function: Involved in protein export

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily

Homologues:

Organism=Escherichia coli, GI1786609, Length=436, Percent_Identity=30.9633027522936, Blast_Score=191, Evalue=9e-50,
Organism=Escherichia coli, GI1786610, Length=169, Percent_Identity=28.9940828402367, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECD_BORBU (O51596)

Other databases:

- EMBL:   AE000783
- RefSeq:   NP_212786.1
- EnsemblBacteria:   EBBORT00000008779
- GeneID:   1195504
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0652
- NMPDR:   fig|224326.1.peg.1036
- TIGR:   BB_0652
- GeneTree:   EBGT00050000006904
- HOGENOM:   HBG354469
- OMA:   GMAVDIN
- PhylomeDB:   O51596
- ProtClustDB:   PRK05812
- BioCyc:   BBUR224326:BB_0652-MONOMER
- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022645
- PRINTS:   PR00702
- TIGRFAMs:   TIGR00916
- TIGRFAMs:   TIGR01129

Pfam domain/function: PF02355 SecD_SecF

EC number: NA

Molecular weight: Translated: 65028; Mature: 65028

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd1cb478)-; HASH(0xd66ff4c)-; HASH(0xd66451c)-; HASH(0xcc14f80)-; HASH(0xd66d05c)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGSKLILILLVTFFACLLIFPTLKWYFLMSVEDKKISSYSQEALRDYSKKKALNDLVK
CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LKELYNKDPNSSIPASLSYLIPIAKNNYRSSMKIPPNIFTAKTLREGFLTDSDMGEVSLE
HHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
IYRYYENIKKGKSRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEREDAIYRIMQI
HHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHH
LKDRVBRFGLTEPKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLL
HHHHHHHCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHH
HRKILEAGSLFSIPEIQASMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDG
HHHHHHCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
AHIKDAGVSNDPRTGRDTVAFSLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYA
CCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHCCCEE
ITGGNVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASAL
EECCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCEEEECCCCCCEEEECCCCHHHH
ALCLVFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
INIVIYERIKEEIREGRRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFA
EEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WSLSVGIVASLFSSLIFSRFILEFIISVRKSKFISISWSSKYAKSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH
>Mature Secondary Structure
MKKGSKLILILLVTFFACLLIFPTLKWYFLMSVEDKKISSYSQEALRDYSKKKALNDLVK
CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LKELYNKDPNSSIPASLSYLIPIAKNNYRSSMKIPPNIFTAKTLREGFLTDSDMGEVSLE
HHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
IYRYYENIKKGKSRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEREDAIYRIMQI
HHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHH
LKDRVBRFGLTEPKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLL
HHHHHHHCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHH
HRKILEAGSLFSIPEIQASMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDG
HHHHHHCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
AHIKDAGVSNDPRTGRDTVAFSLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYA
CCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHCCCEE
ITGGNVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASAL
EECCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCEEEECCCCCCEEEECCCCHHHH
ALCLVFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
INIVIYERIKEEIREGRRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFA
EEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WSLSVGIVASLFSSLIFSRFILEFIISVRKSKFISISWSSKYAKSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9403685