Click here to switch to the map view.

The map label for this gene is yvnA

Identifier: 16080558

GI number: 16080558

Start: 3602074

End: 3602547

Strand: Direct

Name: yvnA

Synonym: BSU35050

Alternate gene names: 16080558

Gene position: 3602074-3602547 (Clockwise)

Preceding gene: 16080556

Following gene: 16080561

Centisome position: 85.45

GC content: 37.34

Gene sequence:

>474_bases
ATGGACAACAGCATTCATGATGAATTATTTCAAGCTATACAACAATTCGCATTAAAAAGGGATAAACGCGTCTGGCAAAA
GGTGCAGATACCATCCATTGGCATATCCTCACAACATCACGATCACCTCAAAAAAGACTGGACTTTGACCCAGCTTCACA
TTGTTTCCTGCATACATACCAGCCAAAATGTGAACAACAGCTTCTTAGCATCCCGTTTACACATCTCAAAAGCCGCTGTT
TCAAAAGCGGTTCATGCTTTGTTGAAACACAATATCATTACAGTGACAAAAAAGCCTGGCAACAAAAAAGAAATTTTTTA
TACGCTAACTGATAGCGGCAGAAAATTGGCGGCATTACATGAACAGCTTCATGAGAAAGCAAAGGAGCAATATAAACAGC
TTTTCAATGAATTTTCAATTGATGATTTAAAAACAGTGACTGCGTTTTTCAACTTGTGGATCAAATATATGTAA

Upstream 100 bases:

>100_bases
CATAAAGAACAAAAAAACGTCTGTCTCTTGAAAATTCCACTATTACCCAGTAAACTAAGGATAGTTAACCAGTTAACAAT
TAAATCAGAGAGGCAAATTG

Downstream 100 bases:

>100_bases
AAAGAGTCTCACCCGCATGGGAGAGACCTTTGGAATTCTATTATGCCCCGTCAAACGCAACGAGAAGTGAAACAGGTCCG
CGTGTATACAGACCGGACTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MDNSIHDELFQAIQQFALKRDKRVWQKVQIPSIGISSQHHDHLKKDWTLTQLHIVSCIHTSQNVNNSFLASRLHISKAAV
SKAVHALLKHNIITVTKKPGNKKEIFYTLTDSGRKLAALHEQLHEKAKEQYKQLFNEFSIDDLKTVTAFFNLWIKYM

Sequences:

>Translated_157_residues
MDNSIHDELFQAIQQFALKRDKRVWQKVQIPSIGISSQHHDHLKKDWTLTQLHIVSCIHTSQNVNNSFLASRLHISKAAV
SKAVHALLKHNIITVTKKPGNKKEIFYTLTDSGRKLAALHEQLHEKAKEQYKQLFNEFSIDDLKTVTAFFNLWIKYM
>Mature_157_residues
MDNSIHDELFQAIQQFALKRDKRVWQKVQIPSIGISSQHHDHLKKDWTLTQLHIVSCIHTSQNVNNSFLASRLHISKAAV
SKAVHALLKHNIITVTKKPGNKKEIFYTLTDSGRKLAALHEQLHEKAKEQYKQLFNEFSIDDLKTVTAFFNLWIKYM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVNA_BACSU (O34692)

Other databases:

- EMBL:   AF017113
- EMBL:   AL009126
- PIR:   B70044
- RefSeq:   NP_391385.1
- ProteinModelPortal:   O34692
- SMR:   O34692
- EnsemblBacteria:   EBBACT00000000555
- GeneID:   936639
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35050
- NMPDR:   fig|224308.1.peg.3511
- GenoList:   BSU35050
- GeneTree:   EBGT00050000001108
- HOGENOM:   HBG344903
- OMA:   GMIESHK
- ProtClustDB:   CLSK376324
- BioCyc:   BSUB:BSU35050-MONOMER
- GO:   GO:0005737
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 18244; Mature: 18244

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSIHDELFQAIQQFALKRDKRVWQKVQIPSIGISSQHHDHLKKDWTLTQLHIVSCIHT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
SQNVNNSFLASRLHISKAAVSKAVHALLKHNIITVTKKPGNKKEIFYTLTDSGRKLAALH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCCHHHHHH
EQLHEKAKEQYKQLFNEFSIDDLKTVTAFFNLWIKYM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNSIHDELFQAIQQFALKRDKRVWQKVQIPSIGISSQHHDHLKKDWTLTQLHIVSCIHT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
SQNVNNSFLASRLHISKAAVSKAVHALLKHNIITVTKKPGNKKEIFYTLTDSGRKLAALH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCCHHHHHH
EQLHEKAKEQYKQLFNEFSIDDLKTVTAFFNLWIKYM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377