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The map label for this gene is yvoA

Identifier: 16080556

GI number: 16080556

Start: 3597289

End: 3598020

Strand: Direct

Name: yvoA

Synonym: BSU35030

Alternate gene names: 16080556

Gene position: 3597289-3598020 (Clockwise)

Preceding gene: 16080555

Following gene: 16080558

Centisome position: 85.33

GC content: 46.17

Gene sequence:

>732_bases
ATGAATATCAATAAACAATCGCCTATTCCGATTTACTATCAGATTATGGAGCAATTAAAAACCCAAATTAAGAACGGAGA
GCTGCAGCCGGATATGCCTCTTCCTTCTGAGCGCGAATATGCCGAACAATTCGGGATCAGCCGGATGACAGTTCGCCAGG
CGCTTTCTAATTTAGTTAATGAAGGCTTGCTCTATCGCCTGAAAGGGCGGGGCACCTTTGTCAGCAAGCCAAAAATGGAA
CAAGCACTTCAAGGGCTGACAAGCTTTACCGAGGATATGAAAAGCCGCGGGATGACACCGGGCAGCAGGCTCATTGATTA
TCAGCTTATTGATTCAACTGAGGAGCTCGCGGCTATATTAGGCTGCGGGCACCCCTCCTCTATCCATAAAATCACTCGGG
TGCGGCTGGCAAATGATATTCCGATGGCGATTGAGTCCTCACATATTCCGTTTGAGCTTGCGGGTGAATTGAACGAATCG
CATTTTCAGTCGTCGATCTATGATCATATTGAAAGGTACAACAGCATACCGATTTCCCGTGCAAAACAGGAGCTTGAGCC
AAGCGCTGCCACCACGGAAGAAGCGAATATTCTTGGTATTCAAAAGGGAGCGCCTGTCCTATTAATTAAACGAACAACAT
ATCTGCAGAACGGAACTGCTTTTGAGCATGCAAAATCCGTATACAGAGGCGACCGTTATACATTTGTCCACTATATGGAT
CGTCTTTCATAA

Upstream 100 bases:

>100_bases
AAGATTTTCCCGCATCTGCTTTGCACCTGCATTCCGATGTTACGGTTTTGATTGATCGTGAAGCCGCGTCATTAAGACCT
TGAAAGGAACATGCTGACTT

Downstream 100 bases:

>100_bases
AAAAAGCCTCCAACCCTTTTTAAGGATTGGAGACATGGCGAAAATCAAACTGGTCTGGTGCCGGACGATATGTTTCTTTT
TTCGTCTTGAACTTCCAGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKME
QALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNES
HFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMD
RLS

Sequences:

>Translated_243_residues
MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKME
QALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNES
HFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMD
RLS
>Mature_243_residues
MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKME
QALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNES
HFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMD
RLS

Specific function: Acts as a weak repressor of yflG expression

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=32.0512820512821, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=26.7241379310345, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=29.0748898678414, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=26.8722466960352, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790304, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVOA_BACSU (O34817)

Other databases:

- EMBL:   AF017113
- EMBL:   AL009126
- PIR:   D70044
- RefSeq:   NP_391383.1
- PDB:   2WV0
- PDBsum:   2WV0
- ProteinModelPortal:   O34817
- SMR:   O34817
- EnsemblBacteria:   EBBACT00000003414
- GeneID:   936626
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35030
- NMPDR:   fig|224308.1.peg.3509
- GenoList:   BSU35030
- GeneTree:   EBGT00050000000778
- HOGENOM:   HBG696565
- OMA:   TEQELIA
- PhylomeDB:   O34817
- ProtClustDB:   CLSK887938
- BioCyc:   BSUB:BSU35030-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00035
- SMART:   SM00345
- SMART:   SM00866

Pfam domain/function: PF00392 GntR; PF07702 UTRA

EC number: NA

Molecular weight: Translated: 27508; Mature: 27508

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVN
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHC
EGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAIL
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHCCHHHHHHHH
GCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISR
CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCHHH
AKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMD
HHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEHHHCCCCHHHHHHHHHCCCCHHHHHHHH
RLS
HCC
>Mature Secondary Structure
MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVN
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHC
EGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAIL
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHCCHHHHHHHH
GCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISR
CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCHHH
AKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMD
HHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEHHHCCCCHHHHHHHHHCCCCHHHHHHHH
RLS
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377