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The map label for this gene is yufP

Identifier: 16080208

GI number: 16080208

Start: 3242610

End: 3243656

Strand: Direct

Name: yufP

Synonym: BSU31560

Alternate gene names: 16080208

Gene position: 3242610-3243656 (Clockwise)

Preceding gene: 16080207

Following gene: 16080209

Centisome position: 76.92

GC content: 49.67

Gene sequence:

>1047_bases
ATGGTTAAACGACTCTCTCATTTACTCGTGCCGCTCATCGCAATCATACTTGGTCTTGCGGCCGGCGCGTTGATTATGCT
TGTGAGCGGCTACAGTGTGGCTAGCGGATATTCGGCTTTGTGGAATGGGATATTCGGAGAAATCTATTATGTCGGAGAAA
CAATCCGGCAAATTACGCCTTATATTTTATCCGGATTGGCTGTCGCCTTTGCATTCCGAACCGGACTCTTTAATATCGGC
GTCGAGGGACAGCTGCTCGTCGGCTGGACAGCAGCGGTTTGGGTCGGTACGGCGTTTGACGGACCGGCATATATTCACTT
GCCGCTCGCATTGATTACAGCGGCAGCTGCAGGAGGATTATGGGGGTTTATTCCCGGCATTTTGAAAGCGCGATTTTACG
TTCATGAAGTCATTGTCACCATTATGATGAATTATATCGCGCTGCACATGACCAATTACATCATTTCAAACGTCTTGACA
GATCATCAGGACAAGACGGGGAAAATTCACGAATCCGCCTCCCTCCGCTCTCCTTTTCTTGAACAGATCACCGATTACTC
ACGGCTGCATTTGGGAATCATCGTTGCCCTTCTCGCAGCAGTTATCATGTGGTTTATCATCAACAAATCTACAAAAGGAT
TTGAGCTCCGGGCGGTCGGGTTTAACCAGCACGCTTCCCAGTATGCCGGCATGAGCGTGCGGAAGAATATCATGACCTCC
ATGCTTATCTCCGGCGCTTTTGCAGGTCTTGCCGGAGCCATGGAGGGCCTAGGGACATTCGAATACGCAGCAGTGAAAGG
CGCATTTACCGGCGTAGGCTTTGACGGTATCGCTGTCGCTCTTCTCGGGGGAAACACAGCCGTAGGCGTTGTACTGGCAG
CATGCCTGCTTGGCGGGCTGAAAATCGGCGCATTAAATATGCCGATTGAATCAGGCGTTCCATCAGAGGTCGTTGATATT
GTGATTGCCATTATTATTCTATTTGTGGCTTCAAGCTATGCGATTCGTTTCGTCATGGGCAAATTGAAGAAAAAGGGGGC
GAACTAA

Upstream 100 bases:

>100_bases
GAAGGACGCATTATCGCCAGCGTTAATCCGCAGGAAACCACTGAACAGGAGCTTGGTCTCTTGATGGCAGGAAGCACGCA
AAAGGAAGCGGGGAAAGCAA

Downstream 100 bases:

>100_bases
GTGGACATTGTGCAGATTTTATCTATCATTGTCCCTGCCACACTCGTCTATGCGGCCCCGCTTATTTTAACTGCTCTCGG
CGGCGTGTTTTCCGAGAGAT

Product: permease

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MVKRLSHLLVPLIAIILGLAAGALIMLVSGYSVASGYSALWNGIFGEIYYVGETIRQITPYILSGLAVAFAFRTGLFNIG
VEGQLLVGWTAAVWVGTAFDGPAYIHLPLALITAAAAGGLWGFIPGILKARFYVHEVIVTIMMNYIALHMTNYIISNVLT
DHQDKTGKIHESASLRSPFLEQITDYSRLHLGIIVALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSVRKNIMTS
MLISGAFAGLAGAMEGLGTFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLAACLLGGLKIGALNMPIESGVPSEVVDI
VIAIIILFVASSYAIRFVMGKLKKKGAN

Sequences:

>Translated_348_residues
MVKRLSHLLVPLIAIILGLAAGALIMLVSGYSVASGYSALWNGIFGEIYYVGETIRQITPYILSGLAVAFAFRTGLFNIG
VEGQLLVGWTAAVWVGTAFDGPAYIHLPLALITAAAAGGLWGFIPGILKARFYVHEVIVTIMMNYIALHMTNYIISNVLT
DHQDKTGKIHESASLRSPFLEQITDYSRLHLGIIVALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSVRKNIMTS
MLISGAFAGLAGAMEGLGTFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLAACLLGGLKIGALNMPIESGVPSEVVDI
VIAIIILFVASSYAIRFVMGKLKKKGAN
>Mature_348_residues
MVKRLSHLLVPLIAIILGLAAGALIMLVSGYSVASGYSALWNGIFGEIYYVGETIRQITPYILSGLAVAFAFRTGLFNIG
VEGQLLVGWTAAVWVGTAFDGPAYIHLPLALITAAAAGGLWGFIPGILKARFYVHEVIVTIMMNYIALHMTNYIISNVLT
DHQDKTGKIHESASLRSPFLEQITDYSRLHLGIIVALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSVRKNIMTS
MLISGAFAGLAGAMEGLGTFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLAACLLGGLKIGALNMPIESGVPSEVVDI
VIAIIILFVASSYAIRFVMGKLKKKGAN

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUFP_BACSU (O05254)

Other databases:

- EMBL:   Z93937
- EMBL:   AL009126
- PIR:   E70009
- RefSeq:   NP_391034.1
- ProteinModelPortal:   O05254
- EnsemblBacteria:   EBBACT00000002177
- GeneID:   937175
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31560
- NMPDR:   fig|224308.1.peg.3159
- GenoList:   BSU31560
- GeneTree:   EBGT00050000001195
- HOGENOM:   HBG646482
- OMA:   PGYGFDA
- ProtClustDB:   CLSK887799
- BioCyc:   BSUB:BSU31560-MONOMER
- InterPro:   IPR001851
- InterPro:   IPR002229
- PRINTS:   PR00342

Pfam domain/function: PF02653 BPD_transp_2

EC number: NA

Molecular weight: Translated: 36844; Mature: 36844

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xff2c4cc)-; HASH(0x11f8e264)-; HASH(0x11bb30e8)-; HASH(0x11f2db6c)-; HASH(0x120ca3f8)-; HASH(0x119fea8c)-; HASH(0x12081938)-; HASH(0x11b65e48)-; HASH(0x10df2348)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRLSHLLVPLIAIILGLAAGALIMLVSGYSVASGYSALWNGIFGEIYYVGETIRQITP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
YILSGLAVAFAFRTGLFNIGVEGQLLVGWTAAVWVGTAFDGPAYIHLPLALITAAAAGGL
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHEECCCCCCCEEHHHHHHHHHHHHCCH
WGFIPGILKARFYVHEVIVTIMMNYIALHMTNYIISNVLTDHQDKTGKIHESASLRSPFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHH
EQITDYSRLHLGIIVALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSVRKNIMTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCHHHHHHHHHH
MLISGAFAGLAGAMEGLGTFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLAACLLGGL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
KIGALNMPIESGVPSEVVDIVIAIIILFVASSYAIRFVMGKLKKKGAN
EECEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MVKRLSHLLVPLIAIILGLAAGALIMLVSGYSVASGYSALWNGIFGEIYYVGETIRQITP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
YILSGLAVAFAFRTGLFNIGVEGQLLVGWTAAVWVGTAFDGPAYIHLPLALITAAAAGGL
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHEECCCCCCCEEHHHHHHHHHHHHCCH
WGFIPGILKARFYVHEVIVTIMMNYIALHMTNYIISNVLTDHQDKTGKIHESASLRSPFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHH
EQITDYSRLHLGIIVALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSVRKNIMTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCHHHHHHHHHH
MLISGAFAGLAGAMEGLGTFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLAACLLGGL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
KIGALNMPIESGVPSEVVDIVIAIIILFVASSYAIRFVMGKLKKKGAN
EECEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377