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The map label for this gene is ytqA

Identifier: 16080100

GI number: 16080100

Start: 3119999

End: 3120967

Strand: Direct

Name: ytqA

Synonym: BSU30480

Alternate gene names: 16080100

Gene position: 3119999-3120967 (Clockwise)

Preceding gene: 255767697

Following gene: 16080101

Centisome position: 74.01

GC content: 47.47

Gene sequence:

>969_bases
GTGATGCAGAACAATCCTTTTCCTTATTCAAATACGGAAAAACGCTATCATACATTGAATTATCATCTCAGAGAACATTT
CGGCCATAAGGTGTTTAAAGTAGCGCTTGACGGCGGTTTTGACTGTCCAAATCGGGATGGCACCGTAGCCCACGGAGGCT
GTACGTTTTGCAGCGCAGCAGGCTCCGGAGATTTTGCTGGAAACCGGACCGATGATTTAATTACGCAATTCCATGACATC
AAAAACCGCATGCACGAAAAATGGAAGGACGGCAAGTACATCGCTTATTTTCAGGCTTTCACAAACACTCACGCCCCGGT
TGAGGTGCTTCGTGAGAAATTCGAATCCGTCCTCGCCTTAGATGATGTGGTCGGCATTTCGATCGCCACACGCCCGGACT
GTCTGCCTGATGATGTCGTTGATTACTTGGCAGAGCTGAATGAACGTACGTATTTGTGGGTGGAGCTTGGGCTTCAAACA
GTTCATGAACGGACTGCACTTTTGATCAACCGCGCACATGATTTTAACTGCTATGTGGAAGGCGTCAATAAATTAAGAAA
ACACGGCATACGTGTCTGCTCGCATATTATCAACGGGCTGCCTTTGGAAGACCGGGACATGATGATGGAAACGGCAAAGG
CCGTCGCAGATTTGGATGTCCAGGGCATTAAAATCCATCTGCTTCACCTACTGAAAGGCACGCCGATGGTCAAACAATAT
GAAAAGGGCAAGCTGGAATTTCTTTCTCAAGATGATTATGTGCAGCTCGTCTGCGATCAGCTTGAGATCATTCCGCCTGA
AATGATCGTCCACCGCATTACAGGTGACGGACCGATTGAGTTGATGATCGGGCCAATGTGGAGCGTCAACAAATGGGAAG
TGCTTGGCGCCATTAATAAAGAGCTAGAAAATCGAGGCAGCTATCAAGGAAAGTTCTTTCAACGGCTTGAGGAGGAATCA
GCGCTATGA

Upstream 100 bases:

>100_bases
TTATTCAATAAAGTAATTTATGGTCGATATTCATTTGTTCTCTTGTGAAATGCGTGCTACAATTTTAGGATGCAATCGTA
CGCAAGGAGGCACATGAATT

Downstream 100 bases:

>100_bases
TTTTGAAGAAAATTCTTCCTTACAGCAAAGAACTGCTGAAAATGGCCGCGGGAGAGGGAGATATTGTCGTAGATGCGACA
ATGGGCAACGGACATGATAC

Product: Fe-S oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMQNNPFPYSNTEKRYHTLNYHLREHFGHKVFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRTDDLITQFHDI
KNRMHEKWKDGKYIAYFQAFTNTHAPVEVLREKFESVLALDDVVGISIATRPDCLPDDVVDYLAELNERTYLWVELGLQT
VHERTALLINRAHDFNCYVEGVNKLRKHGIRVCSHIINGLPLEDRDMMMETAKAVADLDVQGIKIHLLHLLKGTPMVKQY
EKGKLEFLSQDDYVQLVCDQLEIIPPEMIVHRITGDGPIELMIGPMWSVNKWEVLGAINKELENRGSYQGKFFQRLEEES
AL

Sequences:

>Translated_322_residues
MMQNNPFPYSNTEKRYHTLNYHLREHFGHKVFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRTDDLITQFHDI
KNRMHEKWKDGKYIAYFQAFTNTHAPVEVLREKFESVLALDDVVGISIATRPDCLPDDVVDYLAELNERTYLWVELGLQT
VHERTALLINRAHDFNCYVEGVNKLRKHGIRVCSHIINGLPLEDRDMMMETAKAVADLDVQGIKIHLLHLLKGTPMVKQY
EKGKLEFLSQDDYVQLVCDQLEIIPPEMIVHRITGDGPIELMIGPMWSVNKWEVLGAINKELENRGSYQGKFFQRLEEES
AL
>Mature_322_residues
MMQNNPFPYSNTEKRYHTLNYHLREHFGHKVFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRTDDLITQFHDI
KNRMHEKWKDGKYIAYFQAFTNTHAPVEVLREKFESVLALDDVVGISIATRPDCLPDDVVDYLAELNERTYLWVELGLQT
VHERTALLINRAHDFNCYVEGVNKLRKHGIRVCSHIINGLPLEDRDMMMETAKAVADLDVQGIKIHLLHLLKGTPMVKQY
EKGKLEFLSQDDYVQLVCDQLEIIPPEMIVHRITGDGPIELMIGPMWSVNKWEVLGAINKELENRGSYQGKFFQRLEEES
AL

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily

Homologues:

Organism=Homo sapiens, GI23510283, Length=189, Percent_Identity=29.1005291005291, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI2367204, Length=294, Percent_Identity=39.4557823129252, Blast_Score=237, Evalue=7e-64,
Organism=Caenorhabditis elegans, GI133955098, Length=184, Percent_Identity=28.804347826087, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325171, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTQA_BACSU (O35008)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   D69999
- RefSeq:   NP_390926.1
- ProteinModelPortal:   O35008
- EnsemblBacteria:   EBBACT00000002709
- GeneID:   937240
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30480
- NMPDR:   fig|224308.1.peg.3051
- GenoList:   BSU30480
- GeneTree:   EBGT00050000001748
- HOGENOM:   HBG359185
- OMA:   HVILGLP
- PhylomeDB:   O35008
- ProtClustDB:   CLSK2518262
- BioCyc:   BSUB:BSU30480-MONOMER
- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197
- Gene3D:   G3DSA:3.20.20.70
- SMART:   SM00729
- TIGRFAMs:   TIGR01212

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 36764; Mature: 36764

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQNNPFPYSNTEKRYHTLNYHLREHFGHKVFKVALDGGFDCPNRDGTVAHGGCTFCSAA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCEECCC
GSGDFAGNRTDDLITQFHDIKNRMHEKWKDGKYIAYFQAFTNTHAPVEVLREKFESVLAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
DDVVGISIATRPDCLPDDVVDYLAELNERTYLWVELGLQTVHERTALLINRAHDFNCYVE
HHHHCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHH
GVNKLRKHGIRVCSHIINGLPLEDRDMMMETAKAVADLDVQGIKIHLLHLLKGTPMVKQY
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHH
EKGKLEFLSQDDYVQLVCDQLEIIPPEMIVHRITGDGPIELMIGPMWSVNKWEVLGAINK
CCCCEEECCCCCHHHHHHHHHHCCCHHHHHEECCCCCCEEEEECCCCCCCHHHHHHHHHH
ELENRGSYQGKFFQRLEEESAL
HHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MMQNNPFPYSNTEKRYHTLNYHLREHFGHKVFKVALDGGFDCPNRDGTVAHGGCTFCSAA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCEECCC
GSGDFAGNRTDDLITQFHDIKNRMHEKWKDGKYIAYFQAFTNTHAPVEVLREKFESVLAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
DDVVGISIATRPDCLPDDVVDYLAELNERTYLWVELGLQTVHERTALLINRAHDFNCYVE
HHHHCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHH
GVNKLRKHGIRVCSHIINGLPLEDRDMMMETAKAVADLDVQGIKIHLLHLLKGTPMVKQY
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHH
EKGKLEFLSQDDYVQLVCDQLEIIPPEMIVHRITGDGPIELMIGPMWSVNKWEVLGAINK
CCCCEEECCCCCHHHHHHHHHHCCCHHHHHEECCCCCCEEEEECCCCCCCHHHHHHHHHH
ELENRGSYQGKFFQRLEEESAL
HHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377