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The map label for this gene is yqkD

Identifier: 16079421

GI number: 16079421

Start: 2460664

End: 2461581

Strand: Direct

Name: yqkD

Synonym: BSU23640

Alternate gene names: 16079421

Gene position: 2460664-2461581 (Clockwise)

Preceding gene: 16079419

Following gene: 16079429

Centisome position: 58.37

GC content: 45.32

Gene sequence:

>918_bases
TTGAAGAAAATCCTTTTGGCCATTGGCGCGCTCGTAACAGCTGTCATCGCAATCGGAATTGTTTTTTCACATATGATTCT
ATTCATCAAGAAAAAAACGGATGAAGACATTATCAAAAGAGAGACAGACAACGGACATGATGTGTTTGAATCATTTGAAC
AAATGGAGAAAACCGCTTTTGTGATACCCTCCGCTTACGGGTACGACATAAAAGGATACCATGTCGCACCGCATGACACA
CCAAATACCATCATCATCTGCCACGGGGTGACGATGAATGTACTGAATTCTCTTAAGTATATGCATTTATTTCTAGATCT
CGGCTGGAATGTGCTCATTTATGACCATCGCCGGCATGGCCAAAGCGGCGGAAAGACGACCAGCTACGGGTTTTACGAAA
AGGATGATCTCAATAAGGTTGTCAGCTTGCTCAAAAACAAAACAAATCATCGCGGATTGATCGGAATTCATGGTGAGTCG
ATGGGGGCCGTGACCGCCCTGCTTTATGCTGGTGCACACTGCAGCGATGGCGCTGATTTTTATATTGCCGATTGTCCGTT
CGCATGTTTTGATGAACAGCTTGCCTATCGGCTGAGAGCGGAATACAGGCTCCCGTCTTGGCCCCTGCTTCCTATCGCCG
ACTTCTTTTTGAAGCTGAGGGGAGGCTATCGCGCACGTGAAGTATCTCCGCTTGCTGTCATTGATAAAATTGAAAAGCCG
GTCCTCTTTATTCACAGTAAGGATGATGACTACATTCCTGTTTCTTCAACCGAGCGGCTTTATGAAAAGAAACGCGGTCC
GAAAGCGCTGTACATTGCCGAGAACGGTGAACACGCCATGTCATATACCAAAAATCGGCATACGTACCGAAAAACAGTGC
AGGAGTTTTTAGACAACATGAATGATTCAACAGAATAA

Upstream 100 bases:

>100_bases
GCAGACTCTCTTCTGATCACTTTCTCAGCGTAGCAGTGTTTAGGTATAATGATCTTAAACACGAATTGCCTATATATTTC
GTTGAAAGGTGCTGTGACTT

Downstream 100 bases:

>100_bases
AAAAGCGAAAGGCCTCTTCGGCTCTTTCGCTTTTTTATGTTACAGAACGTCGGTAATGCCATCCATATTTTCTCTGATCC
ATTCAATCGCAAGATCTATC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKKILLAIGALVTAVIAIGIVFSHMILFIKKKTDEDIIKRETDNGHDVFESFEQMEKTAFVIPSAYGYDIKGYHVAPHDT
PNTIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSLLKNKTNHRGLIGIHGES
MGAVTALLYAGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVSPLAVIDKIEKP
VLFIHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMSYTKNRHTYRKTVQEFLDNMNDSTE

Sequences:

>Translated_305_residues
MKKILLAIGALVTAVIAIGIVFSHMILFIKKKTDEDIIKRETDNGHDVFESFEQMEKTAFVIPSAYGYDIKGYHVAPHDT
PNTIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSLLKNKTNHRGLIGIHGES
MGAVTALLYAGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVSPLAVIDKIEKP
VLFIHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMSYTKNRHTYRKTVQEFLDNMNDSTE
>Mature_305_residues
MKKILLAIGALVTAVIAIGIVFSHMILFIKKKTDEDIIKRETDNGHDVFESFEQMEKTAFVIPSAYGYDIKGYHVAPHDT
PNTIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSLLKNKTNHRGLIGIHGES
MGAVTALLYAGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVSPLAVIDKIEKP
VLFIHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMSYTKNRHTYRKTVQEFLDNMNDSTE

Specific function: Unknown

COG id: COG1073

COG function: function code R; Hydrolases of the alpha/beta superfamily

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQKD_BACSU (P54567)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   F69966
- RefSeq:   NP_390245.1
- ProteinModelPortal:   P54567
- EnsemblBacteria:   EBBACT00000001619
- GeneID:   938716
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU23640
- NMPDR:   fig|224308.1.peg.2369
- GenoList:   BSU23640
- GeneTree:   EBGT00050000001563
- HOGENOM:   HBG426797
- OMA:   MGAATSI
- PhylomeDB:   P54567
- ProtClustDB:   CLSK887526
- BioCyc:   BSUB:BSU23640-MONOMER
- InterPro:   IPR001375

Pfam domain/function: PF00326 Peptidase_S9

EC number: NA

Molecular weight: Translated: 34646; Mature: 34646

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x103bea74)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLAIGALVTAVIAIGIVFSHMILFIKKKTDEDIIKRETDNGHDVFESFEQMEKTAF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHEE
VIPSAYGYDIKGYHVAPHDTPNTIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHG
EECCCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
QSGGKTTSYGFYEKDDLNKVVSLLKNKTNHRGLIGIHGESMGAVTALLYAGAHCSDGADF
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCE
YIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVSPLAVIDKIEKP
EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
VLFIHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMSYTKNRHTYRKTVQEFLDNM
EEEEECCCCCEECCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
NDSTE
CCCCH
>Mature Secondary Structure
MKKILLAIGALVTAVIAIGIVFSHMILFIKKKTDEDIIKRETDNGHDVFESFEQMEKTAF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHEE
VIPSAYGYDIKGYHVAPHDTPNTIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHG
EECCCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
QSGGKTTSYGFYEKDDLNKVVSLLKNKTNHRGLIGIHGESMGAVTALLYAGAHCSDGADF
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCE
YIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVSPLAVIDKIEKP
EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
VLFIHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMSYTKNRHTYRKTVQEFLDNM
EEEEECCCCCEECCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
NDSTE
CCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377