Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
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Accession | NC_000964 |
Length | 4,215,606 |
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The map label for this gene is yomJ
Identifier: 16079193
GI number: 16079193
Start: 2248417
End: 2249100
Strand: Direct
Name: yomJ
Synonym: BSU21340
Alternate gene names: 16079193
Gene position: 2248417-2249100 (Clockwise)
Preceding gene: 16079192
Following gene: 255767473
Centisome position: 53.34
GC content: 34.65
Gene sequence:
>684_bases ATGGGATATAAGTTTATGGCTTATGGTGGCTATTTTTTATTCTGTCTTTTCTTTTTGCTAATGGACGGCTGGAGAGGCAT GGGAATTTGCTTAATAATTGTAGGTTTAGCCCTATTAGCACTTGAGCCCTATAAAATTAAAGCCCAAAAAAATATAGATA AACTAAAAGAAAATGCGGAAACACTTAAGCACTTCGACGGTGGTTTTAATCCAGACAATTTCTTTAATACTTACAAAACT AAAATTGCATTTAAGGAATCTGATTCCCTTGTGAAAATATATCAGCTTAATAAAGATGAACATATTGAAGAATACACAAT CCCTTTTTCCAATGTTATAGAATCCGAAATTGCTTTAGACAATCAAATAATTTCTAAAGTATCAAAATCAGGAATCGTAG CTGGTGGCCTGTTAGCTGGAGGAATTGGAGCTGCAATTGGAGGGTTGTCTGCCTCTTCAATACAAAATGAAATGGTCAAA TCTGTCACGCTAAAGATTACTGTTGAAGACCTCGGTAAGCCTATCCATTATATCGATTTTCTCCCCACACAAGAAGTTGA AGGGTATAATATTCAGGGGTATAAAAAAGATAGCAATGTCATTCAACAAGCACTTACGAATGCAGAATATTGGCATGGTG TTATGGATGTAATTATTAAGAAAGCAAACAAAGTCGCTCAATAA
Upstream 100 bases:
>100_bases AAAATCAGAAAAGAACTAATGATTTCACTTTCCATTTATACAGTTCTCCATGACTGGAAACAATGGTATAATGTAGGAAA ATGATACCGGCGGTGGTTGA
Downstream 100 bases:
>100_bases CTGAGTGGCTTTTTTCTTTGTCCTCTCCCCTACTGAAAGGAAGTGATTCTTACTTGAGTCAAAACCTCAAAATTATACTA ACCCCGCAAGCTGATACCTC
Product: phage immunity protein; phage SPbeta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MGYKFMAYGGYFLFCLFFLLMDGWRGMGICLIIVGLALLALEPYKIKAQKNIDKLKENAETLKHFDGGFNPDNFFNTYKT KIAFKESDSLVKIYQLNKDEHIEEYTIPFSNVIESEIALDNQIISKVSKSGIVAGGLLAGGIGAAIGGLSASSIQNEMVK SVTLKITVEDLGKPIHYIDFLPTQEVEGYNIQGYKKDSNVIQQALTNAEYWHGVMDVIIKKANKVAQ
Sequences:
>Translated_227_residues MGYKFMAYGGYFLFCLFFLLMDGWRGMGICLIIVGLALLALEPYKIKAQKNIDKLKENAETLKHFDGGFNPDNFFNTYKT KIAFKESDSLVKIYQLNKDEHIEEYTIPFSNVIESEIALDNQIISKVSKSGIVAGGLLAGGIGAAIGGLSASSIQNEMVK SVTLKITVEDLGKPIHYIDFLPTQEVEGYNIQGYKKDSNVIQQALTNAEYWHGVMDVIIKKANKVAQ >Mature_226_residues GYKFMAYGGYFLFCLFFLLMDGWRGMGICLIIVGLALLALEPYKIKAQKNIDKLKENAETLKHFDGGFNPDNFFNTYKTK IAFKESDSLVKIYQLNKDEHIEEYTIPFSNVIESEIALDNQIISKVSKSGIVAGGLLAGGIGAAIGGLSASSIQNEMVKS VTLKITVEDLGKPIHYIDFLPTQEVEGYNIQGYKKDSNVIQQALTNAEYWHGVMDVIIKKANKVAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YOMJ_BACSU (O31975)
Other databases:
- EMBL: AL009126 - RefSeq: NP_390017.1 - ProteinModelPortal: O31975 - EnsemblBacteria: EBBACT00000003411 - GeneID: 939133 - GenomeReviews: AL009126_GR - KEGG: bsu:BSU21340 - NMPDR: fig|224308.1.peg.2140 - GenoList: BSU21340 - BioCyc: BSUB:BSU21340-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25236; Mature: 25104
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xecbfaa4)-; HASH(0x100c7f88)-;
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYKFMAYGGYFLFCLFFLLMDGWRGMGICLIIVGLALLALEPYKIKAQKNIDKLKENAE CCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH TLKHFDGGFNPDNFFNTYKTKIAFKESDSLVKIYQLNKDEHIEEYTIPFSNVIESEIALD HHHHHCCCCCCCHHHHHHHHEEEEECCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHH NQIISKVSKSGIVAGGLLAGGIGAAIGGLSASSIQNEMVKSVTLKITVEDLGKPIHYIDF HHHHHHHHHCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEHHHHCCCEEEHCC LPTQEVEGYNIQGYKKDSNVIQQALTNAEYWHGVMDVIIKKANKVAQ CCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCH >Mature Secondary Structure GYKFMAYGGYFLFCLFFLLMDGWRGMGICLIIVGLALLALEPYKIKAQKNIDKLKENAE CEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH TLKHFDGGFNPDNFFNTYKTKIAFKESDSLVKIYQLNKDEHIEEYTIPFSNVIESEIALD HHHHHCCCCCCCHHHHHHHHEEEEECCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHH NQIISKVSKSGIVAGGLLAGGIGAAIGGLSASSIQNEMVKSVTLKITVEDLGKPIHYIDF HHHHHHHHHCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEHHHHCCCEEEHCC LPTQEVEGYNIQGYKKDSNVIQQALTNAEYWHGVMDVIIKKANKVAQ CCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377