Definition | Helicobacter pylori 26695, complete genome. |
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Accession | NC_000915 |
Length | 1,667,867 |
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Identifier: 15645719
GI number: 15645719
Start: 1166386
End: 1167681
Strand: Reverse
Name: Not Available
Synonym: HP1105
Alternate gene names: NA
Gene position: 1167681-1166386 (Counterclockwise)
Preceding gene: 15645721
Following gene: 15645714
Centisome position: 70.01
GC content: 39.81
Gene sequence:
>1296_bases ATGACTTCAGCTTCAAGCCATTCTTTTAAAGAACAAGATTTTCATATTCCTATCGCTTTTGCTTTTGATAAGAATTACCT CATTCCTGCGGGCGCGTGTCTTTATTCCTTGCTAGAAAGCATCGCTAAAGCCAATAAAAAAATCCGTTACACCCTACACG CTTTAGTGGTAGGCTTGAATGAAGAAGATAAAGCAAAGCTTAATCAAATCACAGAGCCTTTTAAAGAATTTGCCGCTTTG GAAGTGAGAGATATTGAGTCTTTTTTAGACACTATCCCTAACCCTTTTGATGAGGATTTCACTAAGCGTTTTTCTAAAAT GGTGTTAGTGAAGTATTTTTTGGCGGATTTGTTCCCCAAATATTCCAAAATGGTGTGGAGCGATGTGGATGTCATCTTTT GCAATGAATTTAGCGCTGATTTCTTAAACCTTGAAGAAAATGATGAGAATTATTTTTATGGAGTTTTAGAAGTTGAAAAG CACCACATGATGGAAGGGTTTTTGTTTTGCAATTTAGATTACCAGCGCAAGAAAAATTTCACCTTAAGAATGCATGAGCT TTTAAGGGGGAATGAGGCTAAAGGGGAGTTGGATTTCACGAAATGGTGTTGGCCTAACATGAAAGCTTTAGGGATTGAAT ATTGCGTTTTCCCTTATTATTACACCATTAAAGATTTTTCTAACGCGTATTTAAACGAGAATTACAAGAAAACCATTTTA GAGGCACGAGAAAACCCTACCATTATCCACTATGACGCTTGGTGGGGAGCGGTGAAGCCTTGGGACTATCCTTTTGGTTT AAAAGCGGATTTATGGCTGAACGCTTTGGCTAAAACCCCTTTTATGAGCGATTGGATTGATTCGATCGCTAGGGTGGAAA TAGGCAGCGAAAAATGGCATCGTTACCACAGCATCGTTGCCTATCACTACTACTTTCCCCTATGGAAGACTGAAGAGCAG ATCGCCCATGACGCACTCAAGACCTTTTTAGACCATTATTTTTCGTGCATCCATGCCGCAATCAAGCAAGAAAATCTCGG AATGTTCTTGAACCACTACTTCTCGCATGCCCATGCAGAGATCAAAGAAAACTCCCTTGAAATGTTCTTGAACCACTACT TCTCGCATGTTTATAGGCTCCCTAAAAAAGCACGGAAGAGACTCTTTAGGGTGTTTGTCAAACACTGCATCCTCATACCA CTCAAGAGCCTTGTGGGTAAGACTCTACGACTCTTAAAACTCCATGCGCTAGCTAAAAAAATCCTAATCCAACTCAAGCT CTTAAAAAAGAGCTAG
Upstream 100 bases:
>100_bases CTTTAAAAACAGCATAAAAACCAAAAACAGAACCCTTTCAAGTTCGGTTTTTTTTTTTTTTTGGATAAAATAGCCATTAA AAAAGGGTGTTTAATTTTTT
Downstream 100 bases:
>100_bases AGCCAAAACTTTTAATCAAACGATTTTTTCATATCAATCACATAGCGGAATTTCGCTTTCCCATGGGTTAGATTATGATA AGCGGTGTCAATATCCTTGC
Product: LPS biosynthesis protein
Products: NA
Alternate protein names: Lipopolysaccharide 1 2-Glucosyltransferase; Glycosyl Transferase Family Protein; LPS 1 2-Glycosyltransferase; Lps Biosynthesis Protein
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAAL EVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEK HHMMEGFLFCNLDYQRKKNFTLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWHRYHSIVAYHYYFPLWKTEEQ IAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAEIKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIP LKSLVGKTLRLLKLHALAKKILIQLKLLKKS
Sequences:
>Translated_431_residues MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAAL EVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEK HHMMEGFLFCNLDYQRKKNFTLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWHRYHSIVAYHYYFPLWKTEEQ IAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAEIKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIP LKSLVGKTLRLLKLHALAKKILIQLKLLKKS >Mature_430_residues TSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAALE VRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEKH HMMEGFLFCNLDYQRKKNFTLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTILE ARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWHRYHSIVAYHYYFPLWKTEEQI AHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAEIKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIPL KSLVGKTLRLLKLHALAKKILIQLKLLKKS
Specific function: Unknown
COG id: COG1442
COG function: function code M; Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51017; Mature: 50885
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLN CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHEEEEHHHEECC EEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNF HHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHEEEEEECCHHHCCCH TLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL HHHHHHHHCCCCCCCCCCCHHHCCCCCHHHCCEEEHHHHEEEHHHHHHHHHCCCHHHHHH EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWH HCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH RYHSIVAYHYYFPLWKTEEQIAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAE HHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIPLKSLVGKTLRLLKLHALAKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILIQLKLLKKS HHHHHHHHHCC >Mature Secondary Structure TSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLN CCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHEEEEHHHEECC EEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNF HHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHEEEEEECCHHHCCCH TLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL HHHHHHHHCCCCCCCCCCCHHHCCCCCHHHCCEEEHHHHEEEHHHHHHHHHCCCHHHHHH EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWH HCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH RYHSIVAYHYYFPLWKTEEQIAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAE HHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIPLKSLVGKTLRLLKLHALAKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILIQLKLLKKS HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA